PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100058770121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 350aa MW: 38757.4 Da PI: 7.1015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100058770121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	279	324	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR+ri + + +L++l P+ +k + ae+L +AveYIk+Lq Ote100058770121\|100058770121 279 SIAERMRRSRISKNMKKLQDLFPNM----DKQTNTAEMLDLAVEYIKDLQ 324 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.878	273	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-15	276	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-11	277	328	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	278	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	279	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-11	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDSDFFGNHR HHHHQQQSSG LARHQSAPSS FLAAILDSNT DNSSGDESDA FFTALMDAPG 60 DLYPKSNGDN QISCGVKRER XXXXXXXXXS AQIGGYDNGI GSYYVGMERD GNGNRSNILA 120 RQSSSPAGFF NGYGIMGEVG EYRAHDQTEN SSSGGGLSSP MNLSSCSSRF MPSIPETGNE 180 NGRLRNGDYE AVFHHDSWNE PQFNNLKRNR DAADLNMFSG LENQNGETRK KSNGLVSHFS 240 LPKTSTEMAV VENLLQFQPE TTVPCQIRAK RGFATHPRSI AERMRRSRIS KNMKKLQDLF 300 PNMDKQTNTA EMLDLAVEYI KDLQKQVQTL QDSAARCVCS SRPKQTSPTA

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDSDFFGNHR HHHHQQQSSG LARHQSAPSS FLAAILDSNT DNSSGDESDA FFTALMDAPG  60
DLYPKSNGDN QISCGVKRER XXXXXXXXXS AQIGGYDNGI GSYYVGMERD GNGNRSNILA  120
RQSSSPAGFF NGYGIMGEVG EYRAHDQTEN SSSGGGLSSP MNLSSCSSRF MPSIPETGNE  180
NGRLRNGDYE AVFHHDSWNE PQFNNLKRNR DAADLNMFSG LENQNGETRK KSNGLVSHFS  240
LPKTSTEMAV VENLLQFQPE TTVPCQIRAK RGFATHPRSI AERMRRSRIS KNMKKLQDLF  300
PNMDKQTNTA EMLDLAVEYI KDLQKQVQTL QDSAARCVCS SRPKQTSPTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087339.1	1e-131	transcription factor bHLH130
TrEMBL	A0A0H3Y8V8	1e-150	A0A0H3Y8V8_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.B01333.1.p	3e-99	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38