PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100058150021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 494aa MW: 54986.3 Da PI: 8.7035

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100058150021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.1	3.3e-09	78	134	19	89
FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++ k +g i++ +f Cs+e +++++ ++ C a+l+++k++ ++w+vtk++++HnH+ Ote100058150021\|100058150021 78 YTRDKPDGPIISWEFFCSREVFKRKNVES--------------CSAMLQIEKKDPDTWVVTKFVEDHNHST 134 55667788889999999999998887776..............**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-6	79	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDDGVVEVNT EKRKKSRETQ TQHGDDGAQN LTVVSTSQAD NGNRKLYVXX XXXXXXXXXX 60 XXXXXXXXXX XXXHVGQYTR DKPDGPIISW EFFCSREVFK RKNVESCSAM LQIEKKDPDT 120 WVVTKFVEDH NHSTVSPSKV HFLRPRRHFA GATKNALPET ADNQNDIMVS VDGNHLFYDS 180 NLAMQNASPI ETNPVARSMS HAETNSVGRT ASCMETNRAT MSSVPVMPLH YIQPSRVLCR 240 HILTVFTVTN VLKIPSQYIL KRWTRNARAG LLDEKDSRVE CVESLTIRFN NLCREALRFA 300 EEGAIVAETY SAAIDALEEG MKKISLVKKV VAKNKPPCQS SGNFQDTGSR KASVATPETI 360 PSLWPWQDAL PNRFNLNDAG VPVSDLSYPT LAPLAINRDG VLADNTVVLT CFKSMTWVIE 420 SKSLASKVAL INLKLQDYGK APSGETEVQF RLTRTTLEPM LKSMAYISQQ LSTPANKVAV 480 INLKAHASGL LSGF

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDDGVVEVNT EKRKKSRETQ TQHGDDGAQN LTVVSTSQAD NGNRKLYVXX XXXXXXXXXX  60
XXXXXXXXXX XXXHVGQYTR DKPDGPIISW EFFCSREVFK RKNVESCSAM LQIEKKDPDT  120
WVVTKFVEDH NHSTVSPSKV HFLRPRRHFA GATKNALPET ADNQNDIMVS VDGNHLFYDS  180
NLAMQNASPI ETNPVARSMS HAETNSVGRT ASCMETNRAT MSSVPVMPLH YIQPSRVLCR  240
HILTVFTVTN VLKIPSQYIL KRWTRNARAG LLDEKDSRVE CVESLTIRFN NLCREALRFA  300
EEGAIVAETY SAAIDALEEG MKKISLVKKV VAKNKPPCQS SGNFQDTGSR KASVATPETI  360
PSLWPWQDAL PNRFNLNDAG VPVSDLSYPT LAPLAINRDG VLADNTVVLT CFKSMTWVIE  420
SKSLASKVAL INLKLQDYGK APSGETEVQF RLTRTTLEPM LKSMAYISQQ LSTPANKVAV  480
INLKAHASGL LSGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078717.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078718.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078719.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078720.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078721.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_011078722.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549440.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_020549441.1	1e-132	protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBL	A0A4D9B7U0	1e-139	A0A4D9B7U0_SALSN; Uncharacterized protein
STRING	Migut.N01873.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109