PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100055840011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 81aa MW: 8864.79 Da PI: 9.6336 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 59 | 1.8e-18 | 8 | 64 | 21 | 75 |
DUF702 21 heRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrk 75 ++ tCCks+g+d +thvkstWvpaa+rrer +++a s++++s + ++ ++ Ote100055840011|100055840011 8 YTGGGTCCKSKGYDGTTHVKSTWVPAARRRERELMATAVGSSRSTSGrenlN--SAAQQ 64 66667***************************76666554444333323222..22222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.2E-16 | 7 | 68 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-13 | 12 | 36 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 81 aa Download sequence Send to blast |
MSSEDYAYTG GGTCCKSKGY DGTTHVKSTW VPAARRRERE LMATAVGSSR STSGRENLNS 60 AAQQRRLYLL RNEADASIPS F |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231051.2 | 6e-14 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A4D9ASV1 | 3e-13 | A0A4D9ASV1_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9C4A5 | 1e-13 | A0A4D9C4A5_SALSN; Uncharacterized protein |