PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100055340031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 124aa MW: 13832.5 Da PI: 9.1381 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++rWT+eE+ l+ +++++G g W+tI + R+ ++k++w++ Ote100055340031|100055340031 5 KQRWTPEEEAALKAGINKYGVGKWSTILKDPEfnttlRSRSNVDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.147 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.38E-21 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MGAPKQRWTP EEEAALKAGI NKYGVGKWST ILKDPEFNTT LRSRSNVDLK DKWRNMSFMA 60 NGLGSRRANV ALRNSQVALK HDERTSSDSF GVEKDPVVLD AKCLSEVYVT VEDTDSGNQI 120 SRLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854030.1 | 3e-43 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854037.1 | 3e-43 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_012854044.1 | 3e-43 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | C0HIA3 | 1e-29 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A0K1SBA3 | 7e-46 | A0A0K1SBA3_REHGL; Single MYB histone protein | ||||
STRING | Migut.H00343.1.p | 1e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Publications ? help Back to Top | |||
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