PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100054930081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 84aa MW: 9459.23 Da PI: 10.4216 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 123.4 | 7.5e-39 | 19 | 84 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++e+kG+nPGlivll+vggll+vflvgny ly+yaqk+lPPrkkkP+skkk+k e+l+qGv++PGe Ote100054930081|100054930081 19 PNAESKGFNPGLIVLLLVGGLLMVFLVGNYSLYMYAQKTLPPRKKKPISKKKMK-ERLRQGVSAPGE 84 578**************************************************7.9**********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 0.008 | 17 | 84 | No hit | No description |
Pfam | PF04689 | 4.8E-37 | 21 | 84 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MDFEDQSPPS FDRMKDMVPN AESKGFNPGL IVLLLVGGLL MVFLVGNYSL YMYAQKTLPP 60 RKKKPISKKK MKERLRQGVS APGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 5e-31 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 5e-31 | DNA-binding protein S1FA | ||||
Swissprot | P42553 | 1e-15 | S1FA1_ORYSJ; DNA-binding protein S1FA1 | ||||
TrEMBL | W9SCA3 | 1e-24 | W9SCA3_9ROSA; DNA-binding protein S1FA1 | ||||
STRING | Lus10015073 | 1e-29 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3174 | 22 | 49 |