PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100054440171
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CPP
Protein Properties Length: 702aa    MW: 76531 Da    PI: 5.6597
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100054440171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.8e-16416454240
                           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   ++k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  Ote100054440171|100054440171 416 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 454
                                   689**********************************96 PP
2TCR51.12.6e-16501540140
                           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                   ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Ote100054440171|100054440171 501 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNSF 540
                                   589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-18415456IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.96416541IPR005172CRC domain
PfamPF036386.1E-12418453IPR005172CRC domain
SMARTSM011149.6E-18501542IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.5E-12503539IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDTPERSKNS QIATSIGKFE HNIADVCIFC VVMLLLMLFE SPVFNFINSL SPIKPIKPIH  60
ITQTINPLSF ASLPSVFSSP HLGSLRESGC FRRHQLSDPS KPEFSSDHEK FVDRNNLDVH  120
VATKLDEHKE NLDPRSSECE NAARGPFIED QRSVTINEAN LEGFSNLDQY NWDSLIADAS  180
NLLAFESPNI LSCKKSVDPA TAFYRSIKNA IQNAQSLGAA VCEAENISSQ PGEGNEMIEN  240
AAAHEHLPGI YRGMRRRCLV FEMAGAHRKQ MEDGSDSDSP MLLKSDGDAS SNQEMVPIKA  300
GNDSSSLLPG IGLHLNSLAA TSKDIKIVNH ESSASGRLLI GPSSSASFLP PTSGQELLSN  360
TLAMYSLERE IDTFESGGLP LEDPSQESGY IENEDVNASS PKKRRRRLDQ GGDGESCKRC  420
NCKKSKCLKL YCECFAAGVY CVEPCACIDC FNKPIHEDTV LATRKQIESR NPLAFAPKVI  480
RGSDSLPEIG DDFTNTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSIN CRCEGCKNSF  540
GRKDGSGTST TEPEYEEDET DATETAAVDT SLYKTAIHDD LDQFMDSVPP ATPLGATILQ  600
PFESFSNKRP PRATFPSISS YSGLSASQAF GKSSLLPALP ELRPCFETVS EDEMPDFLQG  660
GKSPMSGIKS SSPNRKRVSP PQSTRKLILR SIPSFPSLAP NH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1841853812120Protein lin-54 homolog
5fd3_B1e-1841853812120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00433DAPTransfer from AT4G14770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073448.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A4D8Y9450.0A0A4D8Y945_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345