PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100051170111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 603aa    MW: 67341.1 Da    PI: 9.5862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100051170111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.3e-07510559147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                   r +++  E e lv+av++lG+g+W+ +  +      +Rt  ++k++w ++
  Ote100051170111|100051170111 510 RRPFSVREVEALVEAVEKLGTGRWRDVKMRAFenaDHRTYVDLKDKWKTL 559
                                   6789999*******************97666679*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.92E-5329398IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.29505564IPR017930Myb domain
SMARTSM007176.2E-8509562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10510560IPR009057Homeodomain-like
SuperFamilySSF466891.05E-15511592IPR009057Homeodomain-like
CDDcd116609.67E-17511561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MVLKNRLDYG FNGYRAPVVP RAPRSIRKRG PRKKFVEDNQ FCAFELLAAV AGKLLLESES  60
SASSNAAEVE PRLGSSRDRN EKVQPEDDKA VKSESFDHGS FAESAFVPKI SAEDHNLSKG  120
IPQAGNDEVV EQATARATSD SLEKIDCDIK LGMAEERNLD ENTTCKIGRS NCVGNSFDRK  180
VENRSEVQSE DGKNQIGIRD NDEISFRCNK TSTKSRPQRP QPRAGRHRSR KKTASKYWKA  240
APMQIDYELY NTSEGMKSFH RYRKGIYARE RYQRAPLKER KLSDHSFGVV FDQEQSSDSI  300
YDLPEKGMRV EINNSASGAS IKGHTKAKDP HVGFRIKSFK VPELYIEVPE TATVGSMKRT  360
VMDAVAAMLG GGIGVEVVFQ GKKVRDDHRT LQQTGISHCA NPENLGFILE PSFTHVSSSE  420
TPKKIPPVSS ISPVTHSGVS NASLDPPLVA KLDNVDNNDF ISCPMTPDNM LTDGDSKALI  480
PVPPMNAEAL AIVPLNLKPK HSDISQRRTR RPFSVREVEA LVEAVEKLGT GRWRDVKMRA  540
FENADHRTYV DLKDKWKTLV HTASIAPQQR RGEPVPQELL DRVLTVRSYW SKKHPPPEPL  600
KIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-544946021111Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077209.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077212.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077213.10.0telomere repeat-binding protein 3 isoform X1
TrEMBLA0A4D8ZQW10.0A0A4D8ZQW1_SALSN; Uncharacterized protein
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729