PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100051170051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 268aa MW: 29841.2 Da PI: 9.0679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100051170051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	190.2	1.4e-58	45	264	1	222
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL+ cA+av+++d + +++L++++++as +gd mqRla yf+++L++r a+s++ +++ lp+ +ts ++ l a+ Ote100051170051\|100051170051 45 LRTLLTLCAQAVAADDRTTENEFLKQIRQHASATGDGMQRLAYYFANGLQTRRAGSGNLTCAPLPMLPTS---AADFLRAY 122 5789*******************************************************999999999...9*** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 +++ ++ + k+ ++ aN++ ++ e+++r+HiiDf+i +G+QWp++l+ L++Rp+gpp+l iTg++ p +g + ++ee Ote100051170051\|100051170051 123 HILIATCSFRKIFNFFANRTFMNVSEKATRLHIIDFGILYGFQWPCFLERLSKRPGGPPKLHITGIDLPCPGfrPAARVEE 203 *****************************************************************99999*** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222 tg+rLa++Ae++gvpfefn+ +a+++e++++e+ +++ +E ++Vn+ ++ +l+de+v ++s Ote100051170051\|100051170051 204 TGRRLASYAESFGVPFEFNA-IAQKWETIRVEDVKIEGDELVVVNCLYRGRNLVDETVIVNS 264 ****************.7******************************99998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.311	19	268	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-56	45	264	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MFDKVLLCSG GKNESALRKE LSEVTKNSPQ NDGKKRGGRR SVVDLRTLLT LCAQAVAADD 60 RTTENEFLKQ IRQHASATGD GMQRLAYYFA NGLQTRRAGS GNLTCAPLPM LPTSAADFLR 120 AYHILIATCS FRKIFNFFAN RTFMNVSEKA TRLHIIDFGI LYGFQWPCFL ERLSKRPGGP 180 PKLHITGIDL PCPGFRPAAR VEETGRRLAS YAESFGVPFE FNAIAQKWET IRVEDVKIEG 240 DELVVVNCLY RGRNLVDETV IVNSSADG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-30	45	259	5	218	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858558.1	1e-146	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	5e-90	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A022Q080	1e-145	A0A022Q080_ERYGU; Uncharacterized protein
STRING	Migut.F00778.1.p	1e-146	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]