PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100050210101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 372aa    MW: 41581.5 Da    PI: 8.2339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100050210101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-175296147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r rWT+eE+e++++a k++G   W++I +t+g ++t+ q++s+ qk+
  Ote100050210101|100050210101 52 RERWTEEEHERFLEALKLHGRA-WRKIEETVG-TKTAVQIRSHAQKF 96
                                  78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1746101IPR009057Homeodomain-like
PROSITE profilePS5129421.83647101IPR017930Myb domain
TIGRFAMsTIGR015572.7E-165099IPR006447Myb domain, plants
SMARTSM007171.2E-115199IPR001005SANT/Myb domain
PfamPF002491.8E-135295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-95292IPR009057Homeodomain-like
CDDcd001675.26E-95497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVSAAMGVEE KHGNSSRKIN TTEKILQLKE QFSTVDDCAI KVRKPYTITK QRERWTEEEH  60
ERFLEALKLH GRAWRKIEET VGTKTAVQIR SHAQKFFSKV ARESNNGDGT NSKQIEIPPP  120
RPKRKPKHPY PRKVVALVKT GMSTEKLTRS VSENVSEQDT QSPTSVLSEN HSDESARDDS  180
STPDGSSSPL SSTPVLYTGT DESVSPNPEL SSRGSDLAEE DQPSVQCLKL FGKTLLVKDF  240
FPLQAMPLKF PHEHAPRDTT FEKLSLEDAC SSPPWLTLSG GTQLVHNPTP VRPQLTLKRR  300
ENLDKHEPNE VSSSGSTTDL VANVQEKKGD VESFSSRLSK RSSEDHGKGF VPYKKRNRFD  360
EEGEKGQSCI CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085926.11e-79protein REVEILLE 1
TrEMBLA0A4D8YHR51e-101A0A4D8YHR5_SALSN; Circadian clock associated 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447