PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100050100041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 29307.2 Da PI: 8.3255 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.9 | 1.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+ s++gkl+eys+ Ote100050100041|100050100041 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVXSHKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 106.4 | 3.3e-35 | 83 | 172 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +e + +++ e++kLk+++e Lqr++Rh++GedL+s+s+k+Lq+Le+qL+++lk+iRs+Kn+ll+++i+elq+kek++qe Ote100050100041|100050100041 83 NEPESPVNWTLEHSKLKARVELLQRNHRHYMGEDLDSMSMKDLQNLEHQLDTALKNIRSRKNQLLFDSISELQRKEKAIQE 163 55566789************************************************************************* PP K-box 90 enkaLrkkl 98 +n++L kk Ote100050100041|100050100041 164 QNTMLAKKK 172 *****9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.09E-40 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 16.3 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-29 | 90 | 171 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:3.40.50.300 | 2.6E-4 | 109 | 180 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVXSH KGKLFEYSTD 60 SCMDRILEKY ERYSFAERQL ISNEPESPVN WTLEHSKLKA RVELLQRNHR HYMGEDLDSM 120 SMKDLQNLEH QLDTALKNIR SRKNQLLFDS ISELQRKEKA IQEQNTMLAK KKEKEMGQHT 180 QWEQQQPSTN AVALAPLPPP QPQYLMASQL PTLNNGQVSL LHIGGVYEET SEASRNELDL 240 TLDSLYSCHL GCFAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831692.1 | 1e-131 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_020547619.1 | 1e-130 | floral homeotic protein APETALA 1 | ||||
Swissprot | Q6E6S7 | 1e-117 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A4D9BPT2 | 1e-148 | A0A4D9BPT2_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.E00037.1.p | 1e-130 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Publications ? help Back to Top | |||
---|---|---|---|
|