PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100049890041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 381aa MW: 43951.2 Da PI: 6.6421 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 180 | 226 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ll+++v+++G + W++Ia+ + gR +kqc++rw+++l Ote100049890041|100049890041 180 KGQWTAEEDKLLIHLVEKHGEKKWSKIAQLVK-GRIGKQCRERWHNHL 226 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 232 | 274 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eEd l++++ ++G++ W+ Ia++++ gRt++++k++w+ Ote100049890041|100049890041 232 KDVWTEEEDRVLIEGHVEMGNK-WAEIAKRLP-GRTENSIKNHWN 274 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.536 | 175 | 230 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-18 | 179 | 228 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.71E-32 | 180 | 273 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-18 | 180 | 226 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-28 | 181 | 234 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-16 | 183 | 226 | No hit | No description |
SMART | SM00717 | 4.1E-17 | 231 | 279 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.583 | 231 | 281 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-15 | 232 | 274 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-13 | 235 | 277 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 235 | 281 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEPETKYGNV HGAPPLPLGQ TNNGLKFQAL DDDFCIDNFS SPLRKTYLQD FHQLDQLPLI 60 KPSPFNPDID TQLSVFDPFF HGFDLYEDTK PYDHGNGNGI AFSAMKSFHN CDGILNSTNR 120 KDLFMEIDTT SIAHDPNPFS ILVPDESSCV TEDHFHRETN SVKRGTASTK KGRRKAKSGK 180 GQWTAEEDKL LIHLVEKHGE KKWSKIAQLV KGRIGKQCRE RWHNHLRPDI KKDVWTEEED 240 RVLIEGHVEM GNKWAEIAKR LPGRTENSIK NHWNATKRRQ LSRRKCRTKW PRPTSLLQNY 300 IKSLTTAEKE KNTTTTLRNA DVSDVHFSPS DNMVHDYEIH DDVPDFSFMD QDEPCFHLEF 360 PFDAPPLMQH EVKEELDFSV G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-43 | 180 | 281 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-43 | 180 | 281 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-43 | 180 | 281 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-44 | 180 | 281 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-44 | 180 | 281 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101317.1 | 1e-113 | transcription factor MYB98-like | ||||
TrEMBL | A0A059PRU1 | 1e-137 | A0A059PRU1_SALMI; MYB-related transcription factor | ||||
STRING | Migut.D01939.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |