PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100049850041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 40229 Da PI: 8.6707 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Ote100049850041|100049850041 86 WKCEKCSKRYAVQSDWKAHSKTC 108 58*****************9998 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00069 | 116 | 134 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Ote100049850041|100049850041 116 DCGTVFSRRDSFITHRAFC 134 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 74 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.72E-5 | 81 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MTDESTILSQ DPVNGSDPPP KKKRNLPGTP GHNLPWKLKQ RSSKEVRKRV YVCPEKSCVH 60 HHPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYKCDCGTV 120 FSRRDSFITH RAFCDALAQE TARVTATTNL NYHFMLKPII SSNHQNNVMD QSLPPSLTHS 180 IPINLQHHPL SHPPPYCNLN WDITTQSIPL TNPNEVSVPS LFTTHQSQAH QPDSARMSAT 240 ALLQKAAQIG ATTTDPSIIL GNFDSSVQDG NRLCGLYSSS SITSAFGSDV ESSVNDNSAI 300 NHLQMYSSSK RRRLQSEEIV EGETRDFLGV GINPICHPSS INGXXXXXXX XXXXXXEGFE 360 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-37 | 82 | 151 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-37 | 82 | 151 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100239.1 | 1e-149 | zinc finger protein NUTCRACKER | ||||
Swissprot | Q9ZWA6 | 3e-99 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A4D9B143 | 1e-164 | A0A4D9B143_SALSN; Uncharacterized protein | ||||
STRING | EOX99537 | 1e-136 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Publications ? help Back to Top | |||
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