PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100049190011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YC

Protein Properties

Length: 256aa MW: 28385.5 Da PI: 5.6645

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100049190011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.4	1.2e-54	80	182	2	101
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 l++fw++q i+++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+di Ote100049190011\|100049190011 80 LQNFWATQyeeINQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDI 160 89**998888899************************************************************** PP NF-YC 80 aaavtrtdifdflvdivprdel 101 aaa+trtdifdflvdivpr++l Ote100049190011\|100049190011 161 AAAITRTDIFDFLVDIVPREDL 182 *****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.89E-33	84	173	IPR009072	Histone-fold
Pfam	PF00808	3.3E-22	101	164	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.8E-38	102	179	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEQQGNGQTP GMGVVGSSGQ MPYNVNLYQA NQMTGASSPV ASTQSPRTSG LSASPAQMAQ 60 HQLAYQHIXX XXXXXXXXXL QNFWATQYEE INQVTDFKNH SLPLARIKKI MKADEDVRMI 120 SAEAPVIFAR ACEMFILELT LRAWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE 180 DLKDEVLASM PRGALPVGAP TEGLPYYYMP PQSAPPVGAP GMYVGKPVDP GMYGQQSRPY 240 MGQQMWPQQP PPPPDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-61	86	179	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090777.1	1e-150	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_011090778.1	1e-150	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_011090779.1	1e-150	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_011090780.1	1e-150	nuclear transcription factor Y subunit C-9-like isoform X1
Refseq	XP_011090781.1	1e-150	nuclear transcription factor Y subunit C-9-like isoform X1
Swissprot	Q8L4B2	3e-84	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A4D8ZEV4	1e-139	A0A4D8ZEV4_SALSN; Uncharacterized protein
STRING	XP_009791101.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3422	24	47

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]