PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100048360111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32868.3 Da    PI: 4.5352
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100048360111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1876129356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ +q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ vWFqNrRa+ k
  Ote100048360111|100048360111  76 KKRRLSVDQVQFLERNFEAENKLEPERKVQLANELGLQPRQIAVWFQNRRARCK 129
                                   566899**********************************************99 PP
2HD-ZIP_I/II123.78.8e-4075165191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls +qv++LE++Fe+e+kLeperKv+la+eLglqprq+avWFqnrRAR ktkqlE++ye+L+++y++lk++ + L 
  Ote100048360111|100048360111  75 EKKRRLSVDQVQFLERNFEAENKLEPERKVQLANELGLQPRQIAVWFQNRRARCKTKQLETEYESLHASYKTLKTDYDYLL 155
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreel 91 
                                   ke+e+L++e+
  Ote100048360111|100048360111 156 KENEKLKAEV 165
                                   *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1957133IPR009057Homeodomain-like
PROSITE profilePS5007116.8671131IPR001356Homeobox domain
SMARTSM003891.4E-1774135IPR001356Homeobox domain
PfamPF000461.9E-1576129IPR001356Homeobox domain
CDDcd000861.43E-1776132No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1878138IPR009057Homeodomain-like
PRINTSPR000311.2E-5102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5111127IPR000047Helix-turn-helix motif
PfamPF021832.1E-12131169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSVGGALDLM TKMKSCAHDR PLDSVFASAL SNPFLGPRAM VSFGGVDGVN GSGNSLYESP  60
ENGDEFLDEY FNQPEKKRRL SVDQVQFLER NFEAENKLEP ERKVQLANEL GLQPRQIAVW  120
FQNRRARCKT KQLETEYESL HASYKTLKTD YDYLLKENEK LKAEVLHLQH NGLAQDFEHL  180
SSRLCDTNET CEAVPKEAAD MISICEEHNV TGLTFKNDEQ RSSGSDGEDS PQLADGTRHW  240
LFEADDSSHD FDPLQSGLSL VENCLNEELV QRYCHPPAPS CGYGNALEDH AF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087214.12e-89homeobox-leucine zipper protein HAT5
TrEMBLA0A4D9BRV61e-124A0A4D9BRV6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.D01856.1.p2e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495