PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100048140061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 1133aa    MW: 124761 Da    PI: 6.5106
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100048140061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22158259199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+lt sd++++g +++p++ ae++       ++++++  +++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L
  Ote100048140061|100048140061 158 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldftMQPPAQ--EIVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRL 236
                                   99*****************************96555544..8*************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD+v+F   ++++++l+++++r+
  Ote100048140061|100048140061 237 FAGDSVLFI--RDEKQQLLLGIRRA 259
                                   *********..5688889****997 PP
2Auxin_resp117.31.3e-38284367183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                   aahaa+++s+F v+YnPras+seFv++++k+ k++  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr
  Ote100048140061|100048140061 284 AAHAAANNSPFIVFYNPRASPSEFVIPLAKYYKSVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWR 364
                                   79******************************998669******************************************* PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Ote100048140061|100048140061 365 NLQ 367
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-42149287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40149273IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-19157249No hitNo description
PfamPF023621.1E-20158259IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069158260IPR003340B3 DNA binding domain
SMARTSM010191.3E-22158260IPR003340B3 DNA binding domain
PfamPF065071.0E-33284367IPR010525Auxin response factor
PROSITE profilePS5174527.84810211105IPR000270PB1 domain
PfamPF023091.6E-610231106IPR033389AUX/IAA domain
SuperFamilySSF542772.03E-710381099No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MKTASTGAGV QPANAAAEVE KKNINGELWQ ACAGPLVNLP AAGTHVVYFP QGHSEQGCVS  60
ILAIVSWVGW WTDGWGSSFL FWGVAASMKK DVDAQIPNYP NLPSKLLCRL HNVTLHADPE  120
TDEVYAQMTL QPVPSFDKDA LLRSDLSMKA NRPQTEFFCK TLTASDTSTH GGFSVPRRAA  180
EKIFPALDFT MQPPAQEIVA RDLHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD  240
SVLFIRDEKQ QLLLGIRRAN RQPTNLSSSV LSSDSMHIGI LAAAAHAAAN NSPFIVFYNP  300
RASPSEFVIP LAKYYKSVCS NQISLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN  360
SQWRNLQVGW DESTAGEKRN RVSIWEIEPV TAPFFICPTP PFFRSKRPRQ LGMPDDDTSD  420
LDNIFRRTTP WFGDDFGLKE PQALPGLSLA QWMNMQQTPS LANSMQPNFM SPLPGSILQN  480
LTGADISRQL GMPMPATQIP QQNNLQFNSQ RPTQPVQQLD QLQKLQPSSL NPLGSIMQPQ  540
QQLTDITQSR HNLIGQALPT SQVQSQMLPS QNPIQAQSVV LQQQQSLLSH QLQRNLPQPQ  600
QQPNVLGHSQ QQNLMPPQSS DHVNQQLHAP DNQIQMQLLQ KLHQQQQSML AQQQSAMQQQ  660
PSQLQDHPKL DVSPNFSKSV STSQMLDVPH ATSSVMPPSH VLGQQMTRDS SQTNLRFAQP  720
PQQPNLQQQQ ESGMLPELPG HVGHTLNPVN HQPSGGSSSL LTGAAGGGQS AVTDDVPSCS  780
TSPSTNNCPN GVQLIMNGKN QRAAMVGDEI AQSSLTHLNS SGFDTMPSNS TLVKDLHQKV  840
DVKPSLNVSK NQNQGFFASQ PYLNPTGTQI DYLDSSSSAT SVLSQNDLQI PPNNISMAFN  900
SQSMLFRDAS HDGEVQGDPR SNIPFGANIE NQLGMPMMAD KLITKDMVGS GKDFAANVSS  960
GGGMLSSFDN PKEAQPELSS SMVSQSFGVP DMTFNSMDST VNDGSFINRG AWAPPQIPRM  1020
RTFTKVYKRG AVGRSIDIAR YAGYDDLKQD LARRFGIEGQ LEDGQRIGWK LVYVDHENDV  1080
LLVGDDPWEE FVSCVRCIKI LSPQEVQQMS FDGDFGNSVL SNQACSSSDN GLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642038847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A191T8U10.0A0A191T8U1_SALMI; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465