PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100046160011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 275aa MW: 32018.3 Da PI: 9.3567

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100046160011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162	2.2e-50	22	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrFhPtdeelv +yL++kv++++++l + i+ vdiyk++PwdLpk + +a+ekewyfF++r +ky+++ r+nr+t+sg Ote100046160011\|100046160011 22 PGFRFHPTDEELVGFYLRRKVDKRPIRL-HLISLVDIYKFDPWDLPKsnSSSAGEKEWYFFCRRGRKYKNSIRPNRVTRSG 101 9*************************.88**********95345556899********************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg d++++s+ ++e +glkk+Lv+y+g+a kg ktdW+mhe+rl Ote100046160011\|100046160011 102 FWKATGIDRPIYSSsNRECIGLKKSLVYYRGSAGKGIKTDWMMHEFRL 149 ********9867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.553	20	170	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-53	21	169	IPR003441	NAC domain
Pfam	PF02365	6.9E-26	22	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEVENMSSRI SKEEEKDDVP LPGFRFHPTD EELVGFYLRR KVDKRPIRLH LISLVDIYKF 60 DPWDLPKSNS SSAGEKEWYF FCRRGRKYKN SIRPNRVTRS GFWKATGIDR PIYSSSNREC 120 IGLKKSLVYY RGSAGKGIKT DWMMHEFRLP PALDKSTKHE VWTLCRILKR SVSYRKSVPV 180 WKEMAPAKRS SNRNEVMDAS SESCSDQKGQ SSYMSLERTP VDCFSSEHQL LSMPSSASSY 240 PIQSYMCGDL NGFFRNGDWE DLQSLVDYTN NPLYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-50	22	176	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-50	22	176	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-50	22	176	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-50	22	176	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-50	22	176	22	174	NAC domain-containing protein 19
3swm_B	8e-50	22	176	22	174	NAC domain-containing protein 19
3swm_C	8e-50	22	176	22	174	NAC domain-containing protein 19
3swm_D	8e-50	22	176	22	174	NAC domain-containing protein 19
3swp_A	8e-50	22	176	22	174	NAC domain-containing protein 19
3swp_B	8e-50	22	176	22	174	NAC domain-containing protein 19
3swp_C	8e-50	22	176	22	174	NAC domain-containing protein 19
3swp_D	8e-50	22	176	22	174	NAC domain-containing protein 19
4dul_A	7e-50	22	176	19	171	NAC domain-containing protein 19
4dul_B	7e-50	22	176	19	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553891.1	1e-114	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A346HE90	1e-107	A0A346HE90_9LAMI; NAC042 transcription factor
STRING	XP_009778771.1	1e-105	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]