PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100045940052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ARF | ||||||||
Protein Properties | Length: 718aa MW: 79351.5 Da PI: 7.894 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 3e-12 | 151 | 219 | 1 | 64 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+ Ote100045940052|100045940052 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTA 219 99****************************963.3445679**************************975 PP | |||||||
2 | Auxin_resp | 109.1 | 4.6e-36 | 262 | 343 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 +a+a+s +s+F+++YnPra +se +v++ k+ k+l + +s GmRfk++feted serr+sG++vgvsd+dp +Wp+SkW++ Ote100045940052|100045940052 262 VANAISLRSMFDICYNPRARSSEIIVPYPKFCKSLAQTFSCGMRFKIRFETEDTSERRCSGLIVGVSDVDPASWPGSKWKC 342 6899***************************************************************************** PP Auxin_resp 82 L 82 L Ote100045940052|100045940052 343 L 343 9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.66E-33 | 147 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-24 | 147 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.57E-12 | 149 | 227 | No hit | No description |
Pfam | PF02362 | 1.9E-10 | 151 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-8 | 151 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-30 | 262 | 343 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MLCGLIDLNT INNEDEEASA CISPSSAVAS GNMELAASSS LPSVSMELWH ACAGPLISLP 60 KKGSAVVFFP QGHLEHLSEH PAVAYDLPPH VFCRVFYVKL HADAASDEVY AQVSLIPDQQ 120 IEQKWREGIM ESEPEDEDTD GVGMSMTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL 180 DYKQQRPSQE LVAKDLHGIE WKFRHIYRGQ PRRHLLTTAE HRFRGGDGEL RLGIRRAMQI 240 KSGATIFPTT SQQLNASSIA AVANAISLRS MFDICYNPRA RSSEIIVPYP KFCKSLAQTF 300 SCGMRFKIRF ETEDTSERRC SGLIVGVSDV DPASWPGSKW KCLLVRWDDM EVNRLNRVSP 360 WEIELSGPMS GRNSFVLPGT KRNRIGFPAG KADLPPVHKE GDEVSDFGDP LRFQKVLQGQ 420 EVFAFSSPYS GAEASRNHLS DMRGFPTLGS FHAGGNNRHL HADAQNSSER AGVGESFQFH 480 KVLQGQETMP IQSHGRGPQT NQVQVKNVSN VSNRVQVPRN GNCWSTPTQY NAGTHLSPSI 540 VRGLSPPSVI LLQQSSPQSS HISSLLHAYQ NKLQTCNQDS SLCVSQRISK KFSSSEIGRK 600 DDFEFRSSGA SYVHRQMMLT HHSLPTQPLF RDKQNFVSMC KDNCRLFGFP LTEGKSTVGK 660 CDKEAACASA YGHGSNPLGC NEEQLYQSTP LVTKVRVSNL LKASNMHAAR DRLLDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 8e-92 | 47 | 364 | 22 | 353 | Auxin response factor 1 |
4ldy_B | 8e-92 | 47 | 364 | 22 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554020.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | O23661 | 1e-172 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A191T8S5 | 0.0 | A0A191T8S5_SALMI; Auxin response factor | ||||
STRING | Migut.M01096.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |