PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100045940051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 787aa    MW: 87278 Da    PI: 7.814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100045940051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-12187255164
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                   f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+ 
  Ote100045940051|100045940051 187 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTA 255
                                   99****************************963.3445679**************************975 PP
2Auxin_resp87.13.4e-293324021282
                    Auxin_resp  12 evvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                   ++v++ ra +se +v++ k+ k+l + +s GmRfk++feted serr+sG++vgvsd+dp +Wp+SkW++L
  Ote100045940051|100045940051 332 SIVFQCRARSSEIIVPYPKFCKSLAQTFSCGMRFKIRFETEDTSERRCSGLIVGVSDVDPASWPGSKWKCL 402
                                   699*******************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-24183255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-33183258IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-12185263No hitNo description
SMARTSM010191.6E-8187274IPR003340B3 DNA binding domain
PfamPF023622.1E-10187255IPR003340B3 DNA binding domain
PfamPF065074.5E-24332402IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MLCGLIDLNT INNEDEEASA CISPSSAVAS GNMELAASSS LPSVSMELWH ACAGPLISLP  60
KKGSAVVFFP QGHLEHLSEH PAVAYDLPPH VFCRVFYVKL HADAASDEVY AQVSLIPDQQ  120
VLPNFIQAFE WHSVCMTAAA TLFTLNVKFG KYSELWIEQK WREGIMESEP EDEDTDGVGM  180
SMTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGIEWKFR  240
HIYRGQPRRH LLTTAEHRFR GGDGELRLGI RRAMQIKSGA TIFPTTSQQL NASSIAAVAN  300
AISLRSMFDI CYNPRLYASI FLLIFPFHAS ESIVFQCRAR SSEIIVPYPK FCKSLAQTFS  360
CGMRFKIRFE TEDTSERRCS GLIVGVSDVD PASWPGSKWK CLLVCSCFIC LVQVRWDDME  420
VNRLNRVSPW EIELSGPMSG RNSFVLPGTK RNRIGFPAGK ADLPPVHKEG DEVSDFGDPL  480
RFQKVLQGQE VFAFSSPYSG AEASRNHLSD MRGFPTLGSF HAGGNNRHLH ADAQNSSERA  540
GVGESFQFHK VLQGQETMPI QSHGRGPQTN QVQVKNVSNV SNRVQVPRNG NCWSTPTQYN  600
AGTHLSPSIV RGLSPPSVIL LQQSSPQSSH ISSLLHAYQN KLQTCNQDSS LCVSQRISKK  660
FSSSEIGRKD DFEFRSSGAS YVHRQMMLTH HSLPTQPLFR DKQNFVSMCK DNCRLFGFPL  720
TEGKSTVGKC DKEAACASAY GHGSNPLGCN EEQLYQSTPL VTKVRVSNLL KASNMHAARD  780
RLLDIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-784743322353Auxin response factor 1
4ldy_B3e-784743322353Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554020.10.0auxin response factor 3 isoform X1
TrEMBLA0A191T8S50.0A0A191T8S5_SALMI; Auxin response factor
STRINGMigut.M01096.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61012333