PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100045400121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 155aa MW: 17395.3 Da PI: 4.8898 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 41.2 | 4.1e-13 | 19 | 113 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 + lP + v r++k l + ++ is +d+ e + fi ++++ a+d c++ kr+ in++d++ al ++ f +++e Ote100045400121|100045400121 19 EALPKTIVRRVVKDKLSQvstDSEISvlRDSLLAFSESARVFIHYLSATANDICKESKRQIINAEDVFNALEEIEFPEFIE 99 678888899999987754111555553368888899********************************************* PP NF-YB 82 plkvylkkyreleg 95 pl++ l+++r+ ++ Ote100045400121|100045400121 100 PLRASLEEFRQKNA 113 **********8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.4E-31 | 11 | 149 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.0E-23 | 20 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.8E-8 | 21 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MGEENDGKEA TESVVAEAEA LPKTIVRRVV KDKLSQVSTD SEISVLRDSL LAFSESARVF 60 IHYLSATAND ICKESKRQII NAEDVFNALE EIEFPEFIEP LRASLEEFRQ KNAGRKSQSK 120 AKDTNKTPKR KEPPATSEGR SKRHEVENGK EDDSD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088898.1 | 3e-72 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A4D8ZG58 | 1e-72 | A0A4D8ZG58_SALSN; DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A4D9BYI1 | 2e-72 | A0A4D9BYI1_SALSN; DNA polymerase epsilon subunit 3 | ||||
STRING | Migut.D02442.1.p | 2e-68 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |