PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100044030011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 350aa    MW: 39874.1 Da    PI: 7.0074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100044030011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.8e-54281541128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   +ppGfrFhPtd+e++++yL kkv+++++++  +i e+d++k+ePwdLp+k+k +e+ew+fF+++++ky++g r+nrat+sg
  Ote100044030011|100044030011  28 MPPGFRFHPTDSEIIDHYLLKKVKDRRFRA-VAIGEIDLNKCEPWDLPQKAKMGENEWFFFFEKESKYPSGMRTNRATASG 107
                                   79*************************999.67***************99999**************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkdke++++k+ lvg+kktLvfykgrapkgektdWv+heyrl
  Ote100044030011|100044030011 108 YWKATGKDKEIYREKKLLVGMKKTLVFYKGRAPKGEKTDWVIHEYRL 154
                                   *************9999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5824168IPR003441NAC domain
PROSITE profilePS5100552.41928168IPR003441NAC domain
PfamPF023657.2E-2729154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEGVNYNEEG GGGYYDELAI ESSVVDKMPP GFRFHPTDSE IIDHYLLKKV KDRRFRAVAI  60
GEIDLNKCEP WDLPQKAKMG ENEWFFFFEK ESKYPSGMRT NRATASGYWK ATGKDKEIYR  120
EKKLLVGMKK TLVFYKGRAP KGEKTDWVIH EYRLHAKEKW VVCKVFNKKN DVRTNPAGVQ  180
LARIDSFPDS FILDSPTSLP PLSYDYEKPS SSYAAHDFKP TTTLMLSNDN ALQDGHNHFL  240
FPNIMINSFS APQMVHLNSV FPHQPPSLVH QHQDGPMMGR DATNLIPIKR TDHNPNSRIG  300
AHKAGKEPDR MGKVEETEIN GSERNMQCDE VLVESLGFSP SVSDLDSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-502817115171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078584.11e-104NAC domain-containing protein 92
SwissprotQ9SQQ66e-75NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2G9GVZ89e-85A0A2G9GVZ8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]