PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100043960111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family CO-like
Protein Properties Length: 356aa    MW: 40851.5 Da    PI: 6.8523
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100043960111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.76.5e-101658440
                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                  r C+++ +k ++++C+ ++ +lCe+C +  H+       H++v
  Ote100043960111|100043960111 16 RACDNCARKGARWYCTADDAFLCESCDSLVHSAnplarrHERV 58
                                  68*****************************657888888876 PP
2CCT68.41.9e-23301344144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Ote100043960111|100043960111 301 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 344
                                   9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6371360IPR000315B-box-type zinc finger
SMARTSM003361.1E-101360IPR000315B-box-type zinc finger
PfamPF006437.3E-91558IPR000315B-box-type zinc finger
CDDcd000211.25E-71660No hitNo description
PROSITE profilePS5101716.083301343IPR010402CCT domain
PfamPF062035.6E-18301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVSDRKLAHA VGKPGRACDN CARKGARWYC TADDAFLCES CDSLVHSANP LARRHERVRL  60
KIVEEEGSKA CAPSWHQGFT RKARTPRPKK LSNRLRVVPE PEIGSEEESD EQLLYRVPVL  120
ETAVENYKSK ADESSNNHFP ESELDLADFA ADVESLLGKG LDDDLEGLGI SEKDNCCGRI  180
IKDEDEEENN IINGEARLQL DEVLELNFDY ITFEDENISK IQNHEFKVED DSTKALLXXX  240
XXXXXXXXSA WDDNKSPWTT GEKPEFTSHG WWLPPDCCLG ASGRMRMRNX XXXXXXXXXX  300
REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRASFAASA FPLLNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.21e-107zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A4D9A8F71e-102A0A4D9A8F7_SALSN; Uncharacterized protein
STRINGXP_009765495.12e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470