PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100041460061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 183aa MW: 19108.1 Da PI: 8.0906 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 8.2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V Ote100041460061|100041460061 7 CSGCRTVLLYPSGATNVCCAICNMV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 40.8 | 3.6e-13 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV Ote100041460061|100041460061 46 CGGCRTLLMHARGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 46.6 | 5.4e-15 | 93 | 117 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L++P+GApsV+Ca+C+++ Ote100041460061|100041460061 93 CGNCHTMLMFPAGAPSVKCAICHFI 117 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.2E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.9E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 3.5E-4 | 39 | 115 | No hit | No description |
TIGRFAMs | TIGR01053 | 5.5E-16 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.7E-12 | 90 | 119 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-13 | 93 | 117 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MQSQLVCSGC RTVLLYPSGA TNVCCAICNM VNSVPPPGME MAQLICGGCR TLLMHARGAT 60 SVRCSCCHTV NLVPATAXXX XXXXXNNVAH INCGNCHTML MFPAGAPSVK CAICHFITNV 120 NMGDTRVPIP VHRPAGNSTS APTQSTSTAT TANSHNQTVV VQNPMTVDES GKLVSNVVVG 180 VTT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096731.1 | 6e-97 | protein LSD1 | ||||
Refseq | XP_020551343.1 | 1e-95 | uncharacterized protein LOC105167533 | ||||
Swissprot | Q6ASS2 | 7e-68 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A4D9AS33 | 1e-109 | A0A4D9AS33_SALSN; Uncharacterized protein | ||||
STRING | XP_008225697.1 | 9e-87 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Publications ? help Back to Top | |||
---|---|---|---|
|