PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100040480081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 415aa MW: 45963.7 Da PI: 10.0145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100040480081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	181	203	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H Ote100040480081\|100040480081 181 TCHKCGEQFLKWEALESHHLSkH 203 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	182	203	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.85E-20	205	414	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.0E-8	206	387	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSTRKKKEKP TNVWFSLKNS LHCKSEPSDV HDPTSRKQLS SILTKKNGRS GCSRSIANLK 60 DVIHGSKRHL EKPTTCSPRS IGSSEFLNPI THEVIFSNSR CELKITGFSG SHDEFRCAGG 120 GGGMFVGTLR PGTPDQIPTM HYLKKNSSSH LEREGSLSQK RAPTERNVNG GGXXXXXXXX 180 TCHKCGEQFL KWEALESHHL SKHAVTELVE GDSSRKIVEI ICRSSWPKPE NRCVRIERVL 240 KVHNMQKTIA RFEDYRETVK IKASKLAKKH PRCLADGNEL LRFYGTHLAC SLGINGSSSL 300 CASDKCSVCR IIRHGFSTKR ELTQGIGVFT TSTSGRAFDS VEMNNVADPS IRRALIVCRV 360 IAGRVHRPVE NAHDILGQTG FDSLAGKVGL HSNVEELYLL SPKALLPCFV VICKS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSTRKKKEKP TNVWFSLKNS LHCKSEPSDV HDPTSRKQLS SILTKKNGRS GCSRSIANLK  60
DVIHGSKRHL EKPTTCSPRS IGSSEFLNPI THEVIFSNSR CELKITGFSG SHDEFRCAGG  120
GGGMFVGTLR PGTPDQIPTM HYLKKNSSSH LEREGSLSQK RAPTERNVNG GGXXXXXXXX  180
TCHKCGEQFL KWEALESHHL SKHAVTELVE GDSSRKIVEI ICRSSWPKPE NRCVRIERVL  240
KVHNMQKTIA RFEDYRETVK IKASKLAKKH PRCLADGNEL LRFYGTHLAC SLGINGSSSL  300
CASDKCSVCR IIRHGFSTKR ELTQGIGVFT TSTSGRAFDS VEMNNVADPS IRRALIVCRV  360
IAGRVHRPVE NAHDILGQTG FDSLAGKVGL HSNVEELYLL SPKALLPCFV VICKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554053.1	0.0	uncharacterized protein LOC105174809
TrEMBL	A0A1U8AWZ1	0.0	A0A1U8AWZ1_NELNU; uncharacterized protein LOC104604941
TrEMBL	A0A2C9W6P3	0.0	A0A2C9W6P3_MANES; Uncharacterized protein
STRING	XP_010267823.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35