PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100039650031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 284aa    MW: 33097.2 Da    PI: 9.8975
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100039650031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.3e-161053245
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                   i+ +  r++t+ kR+ g++ K +E  +LCd+++++ii++++g 
  Ote100039650031|100039650031 10 LISKEKSRTTTYKKRKDGLMRKLHEFTTLCDVKACMIIYGHQGS 53
                                  6899999**********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.138152IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-19278IPR002100Transcription factor, MADS-box
CDDcd001205.17E-19253No hitNo description
PRINTSPR004045.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-103859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.850.107.3E-465203IPR001752Kinesin motor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAKLEMKL ISKEKSRTTT YKKRKDGLMR KLHEFTTLCD VKACMIIYGH QGSTEPEIFP  60
QDADQVRRII DTYKSKNKDS GIKSYGVADF FHEREKKIDE ELAKLRKKNM EAKYPTRPEL  120
LNNATEAQLR EXXXXXXXXX XXXXXLDHVR STIELMRRNN QAATSSRLTM RSSQSHAVFE  180
AHHHQQPVIN HHPSVEMHLP FIDHHKSTMM LLMNDAASST NTNIQLQRQV FFQSAAPRPL  240
LARYYAPPQP YMLSSPQLLF SNREAVQEDY IQYEMRNQTP STQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.11e-77agamous-like MADS-box protein AGL14
TrEMBLA0A2G9HM501e-75A0A2G9HM50_9LAMI; MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253