PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100039440011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 401aa    MW: 46336.9 Da    PI: 10.7698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100039440011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-064668123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F r  nL+ H r+H
  Ote100039440011|100039440011 46 FVCEICNQGFQRDQNLQMHRRRH 68
                                  89********************9 PP
2zf-C2H214.78.7e-05123145123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C k +  +s++k H++t+
  Ote100039440011|100039440011 123 WVCEKCWKGYAVQSDYKAHLKTC 145
                                   58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.9E-54668No hitNo description
PROSITE profilePS5015710.7834668IPR007087Zinc finger, C2H2
SMARTSM003550.00954668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM0035511087117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001114144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035587123150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSNYANNPSP SSENPCRRKR RPAGTPDPDA EVVSLSPKTL LESDRFVCEI CNQGFQRDQN  60
LQMHRRRHKV PWKLLKRETP LARKRVFVCP EPTCLHHDPR HALGDLVGIK KHFRRKHSNH  120
KQWVCEKCWK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA CSXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX GVEPQPLLRH RGAVGRPFWF RYSGGWRRRQ RCLKEQLPAA  240
QSGASATDKS RHLRKLNKTR LGSATALHRL LGDRNGQCQX XXXXRCSPRG XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXKLQRE TAEQEFATAK RIREQALADL EKAHALKEQA  360
TRQLNAAVLQ ITCHSCKHRF QQDAAALRRP PFAAEWDVTK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-16121171555Zinc finger protein JACKDAW
5b3h_F6e-16121171555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685984.11e-121protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-116IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A1U8JS971e-117A0A1U8JS97_GOSHI; protein SHOOT GRAVITROPISM 5-like
STRINGAT1G68130.11e-115(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]