PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100039390041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bZIP

Protein Properties

Length: 306aa MW: 33948.8 Da PI: 7.4619

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100039390041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	61.4	1.7e-19	203	265	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rk +NRe+ArrsR+RK+ae eeL++kv++L++eN Lk+e+e+ + ++kl+ e+ Ote100039390041\|100039390041 203 EQELKREKRKLSNRESARRSRLRKQAEAEELANKVEKLTTENINLKSEIEKFMEISKKLELEN 265 789*******************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.2E-21	1	92	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	8.8E-15	197	261	No hit	No description
SMART	SM00338	5.4E-15	203	267	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-18	203	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.036	205	268	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-10	206	259	No hit	No description
CDD	cd14702	3.15E-19	208	256	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGYSAELKPP KPEKPSPPAK DRGTLHAYPD WAMMQAYCGR QFTVPPYLNS AVASLHIPCP 60 YMWVLPQYMT PPYGASYPLL FAHEGVYGHP GVLMGGTGFN MDAPAESEET VDSSDGSNGV 120 PADAGHGCVK RSRAGSCKSE KHDKDLKNFR GFGSTREMSC PAKTMEDMRS VLEFKDISVL 180 NVKPIATYDP QSPTTTEAWL QNEQELKREK RKLSNRESAR RSRLRKQAEA EELANKVEKL 240 TTENINLKSE IEKFMEISKK LELENATLMV CPVSLLSLLA DARVLPITLK SQEKLGDGKV 300 NLPAQE

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093357.1	2e-85	common plant regulatory factor 1 isoform X3
Swissprot	P42776	7e-53	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A2G9I9X4	7e-77	A0A2G9I9X4_9LAMI; Uncharacterized protein
STRING	Migut.B01828.1.p	7e-75	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3113	24	47

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]