PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100039230081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 514aa MW: 57962.5 Da PI: 5.8539

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100039230081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.6	6.6e-26	69	154	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +Y++YA+ vGF+vrk+ ++sk +g++++r+f+Cs++g+r+++k++ ++ +++r+etrtgC a+++v+++ +gk+ vt++e Ote100039230081\|100039230081 69 YYHKYAELVGFNVRKDWVNRSKVHGRVMSRKFTCSRQGHRKKDKRD-VNVKKHRKETRTGCLAHMVVTRQPNGKYLVTQFE 148 8****************************************999.999*************************** PP FAR1 83 leHnHe 88 eHnHe Ote100039230081\|100039230081 149 AEHNHE 154 ***7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-23	69	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MDVNKGEVVV NHETQVDVGM SNNLDLNMDH DCRSPKSSNT NSVCSHRPLK HEVLKLGTEF 60 ESDEQAYIYY HKYAELVGFN VRKDWVNRSK VHGRVMSRKF TCSRQGHRKK DKRDVNVKKH 120 RKETRTGCLA HMVVTRQPNG KYLVTQFEAE HNHEDVNLTR AESLLESPIG RDDSTEISET 180 DSMKNAEIQS KLSFQMLGIR FCPPENFDDL QIDDEISLGS RRTRDMKEGD AARLIEKEKW 240 SAAYGRNTFF IETNGTHLVE LLSDKLRSFL GPDTDVLQFF KHFENVVNEE RAALSDPAFE 300 FAARQLDEVM KGIEGILKFN SFEEVKGSCA PDNELADVGL DRNDFEDQDV HVMKENAGAE 360 SMGPDKDKLN NCGDQVSGVA ACMNVRPLPP ETVLSVACAP SAYISSPSPA PSLSPLTQGL 420 YTIESSHMVQ SMYQASNLSI NQHANPNMYE PPSFYSNQHH SPSHAQFLQE SLIHNQFQDP 480 VSNGNQLKQV MDDGQQPHSS SFMHYGQRYR AAGV

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MDVNKGEVVV NHETQVDVGM SNNLDLNMDH DCRSPKSSNT NSVCSHRPLK HEVLKLGTEF  60
ESDEQAYIYY HKYAELVGFN VRKDWVNRSK VHGRVMSRKF TCSRQGHRKK DKRDVNVKKH  120
RKETRTGCLA HMVVTRQPNG KYLVTQFEAE HNHEDVNLTR AESLLESPIG RDDSTEISET  180
DSMKNAEIQS KLSFQMLGIR FCPPENFDDL QIDDEISLGS RRTRDMKEGD AARLIEKEKW  240
SAAYGRNTFF IETNGTHLVE LLSDKLRSFL GPDTDVLQFF KHFENVVNEE RAALSDPAFE  300
FAARQLDEVM KGIEGILKFN SFEEVKGSCA PDNELADVGL DRNDFEDQDV HVMKENAGAE  360
SMGPDKDKLN NCGDQVSGVA ACMNVRPLPP ETVLSVACAP SAYISSPSPA PSLSPLTQGL  420
YTIESSHMVQ SMYQASNLSI NQHANPNMYE PPSFYSNQHH SPSHAQFLQE SLIHNQFQDP  480
VSNGNQLKQV MDDGQQPHSS SFMHYGQRYR AAGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101183.1	1e-127	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_011101184.1	1e-127	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A4D8YZX1	1e-131	A0A4D8YZX1_SALSN; Uncharacterized protein
TrEMBL	A0A4D9AAZ6	1e-129	A0A4D9AAZ6_SALSN; Uncharacterized protein
STRING	Migut.F01137.1.p	1e-122	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40