PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100038450001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | Dof | ||||||||
Protein Properties | Length: 97aa MW: 10581 Da PI: 8.8999 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 50.2 | 5.4e-16 | 69 | 97 | 2 | 30 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPr 30 ++++lkcprC+stntkfCy+nnyslsqPr Ote100038450001|100038450001 69 PDSSLKCPRCESTNTKFCYFNNYSLSQPR 97 57889***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-18 | 53 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-13 | 71 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 15.063 | 73 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MVFSSLPPYL DPSNWHQQQN HHIIGSSAAN HLLPPTPPQA AVAAAPPPPG SIRPGSMSER 60 ARVANIPMPD SSLKCPRCES TNTKFCYFNN YSLSQPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269|PubMed:30626969}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549341.1 | 1e-38 | LOW QUALITY PROTEIN: dof zinc finger protein DOF5.1-like | ||||
Swissprot | O80928 | 3e-26 | DOF24_ARATH; Dof zinc finger protein DOF2.4 | ||||
TrEMBL | A0A4D8YJT3 | 1e-46 | A0A4D8YJT3_SALSN; Uncharacterized protein | ||||
STRING | XP_004505871.1 | 3e-35 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Publications ? help Back to Top | |||
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