PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100038440041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 302aa    MW: 34036.4 Da    PI: 6.6263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100038440041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0863103345
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   ++T++E+el +++++  G++ W  Ia  ++ g+t++++k  w+
  Ote100038440041|100038440041  63 SFTPQEEELVIQLHAAIGSR-WPIIALQLP-GKTENDVKILWN 103
                                   69******************.*********.*******97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0631051IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-62467IPR009057Homeodomain-like
SuperFamilySSF466897.1E-1540114IPR009057Homeodomain-like
PROSITE profilePS5129412.90358110IPR017930Myb domain
SMARTSM007179.6E-760108IPR001005SANT/Myb domain
PfamPF002497.8E-863104IPR001005SANT/Myb domain
CDDcd001674.67E-563106No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1368110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVKTSSSNIW NEDGDANTGP YASKQRGTGN WTTYSKRSGQ RRSGKSCRER WSGNQKVDPK  60
LKSFTPQEEE LVIQLHAAIG SRWPIIALQL PGKTENDVKI LWNSKLKKKL SAMGIDPVTH  120
KPYSQILADY GNMGAFPKAR THLTSLSRDL KSALILKPPE QPRRHPHPHP QVKAELSDHL  180
YSQIQAINLV TEASNYTNXX XXXXXXXXXX XXXXXXXXXX XSPYLAVNQE FSWSDFFLED  240
AQENVVEYDD KQIGCGDAAE KIDGGSSCFD ASSSSAFVEA MIGKEDEMCS QLPCFYEEPF  300
YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-142411023108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071760.11e-108transcription factor MYB35-like isoform X2
TrEMBLA0A059PRW91e-108A0A059PRW9_SALMI; MYB-related transcription factor
STRINGMigut.I00107.1.p6e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922