PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100037890011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26723.5 Da PI: 9.5047 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 33 | 83 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s Ote100037890011|100037890011 33 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 83 68***********************************************86 PP | |||||||
2 | K-box | 49 | 2.7e-17 | 98 | 156 | 13 | 71 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 a ++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++ +L +++++slk iR++K + Ote100037890011|100037890011 98 IARKMQEHLKKLKEINRNLRREIRQRMGESLNDLGYEQIVNLIEDMDSSLKLIRETKLK 156 4679****************************************************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.095 | 25 | 85 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-36 | 25 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.73E-37 | 26 | 97 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-30 | 27 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 27 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-27 | 27 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 34 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-27 | 47 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-27 | 62 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-9 | 97 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.423 | 99 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
LELFHHFRRS VELXXXXXXX XXXXXARGKI QIKKIENQTN RQVTYSKRRN GLFKKAHELT 60 VLCDAKISIL MISSTQKLHE YISPTISTKQ IFDEYQKIAR KMQEHLKKLK EINRNLRREI 120 RQRMGESLND LGYEQIVNLI EDMDSSLKLI RETKLKNVED IHKGLLLQFD DPHYGLVEND 180 GDYNSVMGFP HGGPRIIAVC APPNXXXXXX XXXSLHSGTG ASDLTTYALL E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-14 | 26 | 83 | 2 | 59 | MEF2C |
5f28_B | 2e-14 | 26 | 83 | 2 | 59 | MEF2C |
5f28_C | 2e-14 | 26 | 83 | 2 | 59 | MEF2C |
5f28_D | 2e-14 | 26 | 83 | 2 | 59 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306615.1 | 1e-108 | floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-108 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A2D0USD5 | 1e-112 | A0A2D0USD5_SALMI; MADS box transcription factor | ||||
STRING | Migut.N03130.1.p | 3e-96 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2314 | 24 | 51 |
Publications ? help Back to Top | |||
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