PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100037890001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 30983.4 Da    PI: 9.574
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100037890001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32.1e-2873123151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s
  Ote100037890001|100037890001  73 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 123
                                   68***********************************************86 PP
2K-box48.53.6e-171381961371
                         K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                    a ++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++ +L +++++slk iR++K +
  Ote100037890001|100037890001 138 IARKMQEHLKKLKEINRNLRREIRQRMGESLNDLGYEQIVNLIEDMDSSLKLIRETKLK 196
                                   4679****************************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-3665124IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.09565125IPR002100Transcription factor, MADS-box
CDDcd002652.79E-3766137No hitNo description
SuperFamilySSF554555.89E-3067140IPR002100Transcription factor, MADS-box
PROSITE patternPS00350067121IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-266787IPR002100Transcription factor, MADS-box
PfamPF003192.5E-2374121IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-2687102IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-26102123IPR002100Transcription factor, MADS-box
PfamPF014861.7E-9137197IPR002487Transcription factor, K-box
PROSITE profilePS512979.423139215IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLYTKTAMQR AKTTSNHANY ANLDSLSFHI SEHTDLPALS VPKLMPLRVS VELXXXXXXX  60
XXXXXARGKI QIKKIENQTN RQVTYSKRRN GLFKKAHELT VLCDAKISIL MISSTQKLHE  120
YISPTISTKQ IFDEYQKIAR KMQEHLKKLK EINRNLRREI RQRMGESLND LGYEQIVNLI  180
EDMDSSLKLI RETKLKNVED IHKGLLLQFD DPHYGLVEND GDYNSVMGFP HGGPRIIAVC  240
APPNXXXXXX XXXSLHSGTG ASDLTTYALL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1466123259MEF2C
5f28_B2e-1466123259MEF2C
5f28_C2e-1466123259MEF2C
5f28_D2e-1466123259MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306615.11e-108floral homeotic protein DEFICIENS
SwissprotP237061e-108DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2D0USD51e-113A0A2D0USD5_SALMI; MADS box transcription factor
STRINGMigut.N03130.1.p2e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]