PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100036690011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 307aa    MW: 33880.4 Da    PI: 9.5815
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100036690011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14102146347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT+eE++l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
  Ote100036690011|100036690011 102 PWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 146
                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.44595151IPR017930Myb domain
SMARTSM007172.2E-999149IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-15101150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-10101145IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-16101149IPR006447Myb domain, plants
PfamPF002492.3E-11102146IPR001005SANT/Myb domain
CDDcd001671.16E-9102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLKSSESPSS ASTGGEIMLF GVRVRVDPMR KSVSMNNLSE YEPVVNDGTK NSEMSKRAPE  60
DGYASADDAV PQPSGGNRER KRGQISYLHL HIRLIRIILG VPWTEEEHKL FLLGLQKVGK  120
GDWRGISRNY VKTRTPTQVA SHAQKYFLRX XXXXXXXXXX XXLFDITTDS VITFTVLKFP  180
VTAMPIEEAK NHQESPVRPP TTVPLSIASN GNGFSVVPYP VTVAPVLFSA SKAKNDVANN  240
SSQTITRPMQ CSSAMVDLNL RNKIPQEPLP LSLRLSLSSC QDQPSTQASA FQIMQGFKNE  300
DCTISVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071772.11e-104transcription factor MYB1R1
SwissprotQ2V9B09e-69MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A2G9GK847e-88A0A2G9GK84_9LAMI; Uncharacterized protein
STRINGXP_009760664.12e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25742351
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]