PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100036140041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

BBR-BPC

Protein Properties

Length: 287aa MW: 32340.3 Da PI: 9.4612

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100036140041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	241.8	4.8e-74	79	287	103	301
GAGA_bind 103 sgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183 sg k ++ qq ++++ a+ + + + a+ ++ + + + k +k+++++k p+ k++++ +s Ote100036140041\|100036140041 79 SGGKGVQFQQQ---MRMTEAAYSPKGGDSSVAETVKPGRGRQMKDKDVKATKSGKPPRGGKRRAEAAVIXXXXXXXXXHS- 155 44455544444...444444444333333333334444444444444444444444433333322221111111111111. PP GAGA_bind 184 der.................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247 + + ++k +l+ln++++Des++PvPvCsCtG+++ CY+WGnGGWqSaCCtttiS+yPLP++ Ote100036140041\|100036140041 156 --DaykgwkneqgleseeeeQMVSWK-DNLGLNQINFDESAMPVPVCSCTGSPQPCYRWGNGGWQSACCTTTISMYPLPQV 233 ..012233333344444442555565.58************************************************** PP GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +++r +R++grKmS++af+klL++LaaeGyd+s p+DLkdhWAkHGtn++ t++ Ote100036140041\|100036140041 234 ANKRYSRVGGRKMSGSAFNKLLNRLAAEGYDFSSPLDLKDHWAKHGTNRYSTLK 287 ************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.1E-64	63	287	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.5E-72	89	287	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MLPSENGIWH WRRGRELFPS GIWQCYRGML QLLNEMLPYR NGMKQSPPYV XXXXXXXXXX 60 XXMNDNSSIP NSLENEFDSG GKGVQFQQQM RMTEAAYSPK GGDSSVAETV KPGRGRQMKD 120 KDVKATKSGK PPRGGKRRAE AAVIXXXXXX XXXHSDAYKG WKNEQGLESE EEEQMVSWKD 180 NLGLNQINFD ESAMPVPVCS CTGSPQPCYR WGNGGWQSAC CTTTISMYPL PQVANKRYSR 240 VGGRKMSGSA FNKLLNRLAA EGYDFSSPLD LKDHWAKHGT NRYSTLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099810.1	1e-106	protein BASIC PENTACYSTEINE6
Refseq	XP_011099811.1	1e-106	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	2e-56	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A4D8ZWH3	1e-113	A0A4D8ZWH3_SALSN; Uncharacterized protein
TrEMBL	A0A4D9ARJ6	1e-114	A0A4D9ARJ6_SALSN; Uncharacterized protein
STRING	Migut.H01143.1.p	1e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30