Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.8 | 5.9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien rqvtfskRr+g++KKA+ELSvLC+aevaviifs+tgkl+e++
Ote100035980031|100035980031 9 KKIENVNSRQVTFSKRRAGLFKKANELSVLCEAEVAVIIFSNTGKLFEFA 58
68***********************************************8 PP
|
2 | K-box | 50 | 1.3e-17 | 92 | 161 | 19 | 88 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88
+e++ Lk+eie+L+ +q +llG+dL+ +s +eL+ Le+qL+++l ++++K++ + + e+l+++ +el+
Ote100035980031|100035980031 92 KEADILKEEIEKLKLKQLRLLGKDLTGMSSQELHLLERQLNEGLICVKERKEQRAVLENETLRRQVEELR 161
799*************************************************************999986 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.805 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-42 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 9.03E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.08 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-11 | 92 | 161 | IPR002487 | Transcription factor, K-box |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}. |