PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100035610091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 342aa    MW: 37705.8 Da    PI: 4.6831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100035610091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.63e-291452513112
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   + L+ecA a+++g+l++a++++  l++++s +gdp +R+aay++eAL ar+a ++++ly al++++++   ss++l+a+++
  Ote100035610091|100035610091 145 RFLFECAAAIHNGNLKEASSMIDVLRQHVSIQGDPSERIAAYMVEALVARMATTGKGLYGALRCKKAP---SSDRLSAMQV 222
                                   579****************************************************************9...9********* PP

                          GRAS  84 fsevsPilkfshltaNqaIleavegeerv 112
                                   ++ev+P+++f++++aN  Il+a+  e+ v
  Ote100035610091|100035610091 223 LFEVCPCFRFGFMAANGVILDAFRDEKIV 251
                                   ***********************999865 PP
2GRAS44.13.3e-14271335157222
                          GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                                    l+ +g+rL+++A+ l+++fef++ + ++++ ++++ L+ ++gEal+Vn++++lh l+desvs+ +
  Ote100035610091|100035610091 271 GLKIIGQRLEELAKDLHLSFEFQA-IPSETTLVSPSLLERREGEALVVNFAFHLHDLPDESVSTVN 335
                                   58899*******************.7999*********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.119117342IPR005202Transcription factor GRAS
PfamPF035141.0E-26145251IPR005202Transcription factor GRAS
PfamPF035141.1E-11271335IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSLAGSAALF RNRELYSLKN GNDNLGLSTA GLYTSGSSSF DSHDPKCFLD SPSTSDLLQD  60
PFNQFSYGSE LDSPGIIDYD EDKLRMKLQE LEKVLLVDDS NCNGMEIDGE WLEDSPKGSS  120
CSDFSRSSII ISKEVVISTP LLRKRFLFEC AAAIHNGNLK EASSMIDVLR QHVSIQGDPS  180
ERIAAYMVEA LVARMATTGK GLYGALRCKK APSSDRLSAM QVLFEVCPCF RFGFMAANGV  240
ILDAFRDEKI VXXXXXXXXX XXXXXXXAIG GLKIIGQRLE ELAKDLHLSF EFQAIPSETT  300
LVSPSLLERR EGEALVVNFA FHLHDLPDES VSTVNVRYGF SA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101883.11e-114scarecrow-like protein 1
RefseqXP_011101887.11e-114scarecrow-like protein 1
RefseqXP_011101891.11e-114scarecrow-like protein 1
RefseqXP_011101898.11e-114scarecrow-like protein 1
RefseqXP_020547813.11e-114scarecrow-like protein 1
SwissprotQ9SDQ39e-83SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A4D9C2W41e-130A0A4D9C2W4_SALSN; Uncharacterized protein
STRINGXP_009628410.12e-98(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]