PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100035610021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 160aa MW: 18214 Da PI: 7.3882 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 90.5 | 2.7e-28 | 2 | 91 | 284 | 374 |
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +vE+++l+r+i n++aceg er+er e +kWr+r+++aGFk+ p+s ++ +++ l+++++++ ++v ee+g l +gW++ Ote100035610021|100035610021 2 NVEKHCLARDIINIIACEGVERIERYEVSGKWRSRMMMAGFKACPISRNVRGEIEKLVEQYSNR-FKVSEEEGGLRFGWEE 81 79************************************************************77.**************** PP GRAS 365 rpLvsvSaWr 374 ++L++ SaWr Ote100035610021|100035610021 82 KTLIVSSAWR 91 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.708 | 1 | 72 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-26 | 2 | 91 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MNVEKHCLAR DIINIIACEG VERIERYEVS GKWRSRMMMA GFKACPISRN VRGEIEKLVE 60 QYSNRFKVSE EEGGLRFGWE EKTLIVSSAW RNSDVGIEHL TLFSEDELVH QVWRGGQYTL 120 RGASKAATLA LVCIPFVPKN RPTMGEVVKA LEQLQDTISL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022879081.1 | 7e-44 | scarecrow-like protein 1 | ||||
Refseq | XP_022879082.1 | 7e-44 | scarecrow-like protein 1 | ||||
Refseq | XP_022879083.1 | 7e-44 | scarecrow-like protein 1 | ||||
Refseq | XP_022879084.1 | 7e-44 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 6e-35 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A4D9C2W4 | 1e-46 | A0A4D9C2W4_SALSN; Uncharacterized protein | ||||
STRING | VIT_04s0044g01370.t01 | 3e-39 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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