PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100034770041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 740aa MW: 83285.9 Da PI: 6.3411

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100034770041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	340.5	2.9e-104	357	736	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++lL+ cA+av+++d + a+ +L++++++asp+gd mqRla+yf+ +L+ar+a+s++ y +p+ +ts ++ l a+ Ote100034770041\|100034770041 357 LRTLLTLCAQAVAADDRRTANDFLKQIRQHASPTGDGMQRLAHYFADGLEARMAGSSNLAYTPVPTLPTS---AADFLRAY 434 5789*************************************************999999988888888...9*** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfd........isqGlQWpaLlqaLasRpegppslRiTgvgspesg. 153 +++ ++P+ k+s++ aN++ ++ e+++r+Hi +G+QWp++lq L++Rp+gpp+lRiTg++ p +g Ote100034770041\|100034770041 435 HVLIATCPFRKISNFFANKTFMNVSEKATRLHIXXXXxxxxxxxxXLYGFQWPCFLQRLSKRPGGPPRLRITGIDLPCPGf 515 *****************************876411111111679*************************9999 PP GRAS 154 .skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233 + ++eetg rLa++Ae++gvpfefn+ +a+++e+++le+L+++++E l+Vn+ ++ +llde+v ++s+r++vL+l+k+ Ote100034770041\|100034770041 516 rPAARVEETGMRLASYAETFGVPFEFNA-IAQKWETIKLEDLKIEKDELLVVNCLYRGRNLLDETVIVNSPRNTVLNLIKK 595 9***********************.7*********************************************** PP GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314 ++P v+v + +n++ F +rf eal +ys+l+d+l++ +pre +er+ vEr ++g+e+vnv+ace aer+er e++++ Ote100034770041\|100034770041 596 MNPAVFVQGVVNGAYNAPFFITRFREALFHYSSLYDMLDTIIPREIHERVLVERTVFGQEAVNVIACEAAERIERPESYKQ 676 ***************************************************************************** PP GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 W+ r +aGF ++pl+++++k a+ ++ + + + ++e+ g+l++gWk+r ++s+S+Wr Ote100034770041\|100034770041 677 WQVRNVRAGFVQLPLDKEIVKMARNRVKLSYHKDFVIDEDGGWLLQGWKGRIIYSLSSWR 736 ***************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.099	331	716	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.9E-102	357	736	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MDKQFSSYSA LISGVRSNEE ALHVFQNPSL INDMRISDRF LNVHVNDIPR PISSHCSFDT 60 GGQPLEGDYH EDFDFSDEVL KFINHILMEE DVEDKTCMFQ ESAALQAAEK SFCDVLGPPS 120 SANQLVPDLD QSVESPEEKF HQESNFFYDH SNVDSFCPNW FYEPSFDGFD RHHITVDVVS 180 QSTSQSSYSS SSSNGAFIDG PVDSPVSILK IPDVFGDKES ALQFQKGAEE ARKFLPSGTN 240 LTMGKEAVST TSAVKLEKKF DEESIDIPRG KKNPYHESLG LGEERSSKQS AVFSDTMVSA 300 DMFDKVLLCS GGKNESLLRK ELSEVTKSSP KEDRSEGSNG GKGRGKKKGG RRNVVDLRTL 360 LTLCAQAVAA DDRRTANDFL KQIRQHASPT GDGMQRLAHY FADGLEARMA GSSNLAYTPV 420 PTLPTSAADF LRAYHVLIAT CPFRKISNFF ANKTFMNVSE KATRLHIXXX XXXXXXXXXX 480 LYGFQWPCFL QRLSKRPGGP PRLRITGIDL PCPGFRPAAR VEETGMRLAS YAETFGVPFE 540 FNAIAQKWET IKLEDLKIEK DELLVVNCLY RGRNLLDETV IVNSPRNTVL NLIKKMNPAV 600 FVQGVVNGAY NAPFFITRFR EALFHYSSLY DMLDTIIPRE IHERVLVERT VFGQEAVNVI 660 ACEAAERIER PESYKQWQVR NVRAGFVQLP LDKEIVKMAR NRVKLSYHKD FVIDEDGGWL 720 LQGWKGRIIY SLSSWRPAHC

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MDKQFSSYSA LISGVRSNEE ALHVFQNPSL INDMRISDRF LNVHVNDIPR PISSHCSFDT  60
GGQPLEGDYH EDFDFSDEVL KFINHILMEE DVEDKTCMFQ ESAALQAAEK SFCDVLGPPS  120
SANQLVPDLD QSVESPEEKF HQESNFFYDH SNVDSFCPNW FYEPSFDGFD RHHITVDVVS  180
QSTSQSSYSS SSSNGAFIDG PVDSPVSILK IPDVFGDKES ALQFQKGAEE ARKFLPSGTN  240
LTMGKEAVST TSAVKLEKKF DEESIDIPRG KKNPYHESLG LGEERSSKQS AVFSDTMVSA  300
DMFDKVLLCS GGKNESLLRK ELSEVTKSSP KEDRSEGSNG GKGRGKKKGG RRNVVDLRTL  360
LTLCAQAVAA DDRRTANDFL KQIRQHASPT GDGMQRLAHY FADGLEARMA GSSNLAYTPV  420
PTLPTSAADF LRAYHVLIAT CPFRKISNFF ANKTFMNVSE KATRLHIXXX XXXXXXXXXX  480
LYGFQWPCFL QRLSKRPGGP PRLRITGIDL PCPGFRPAAR VEETGMRLAS YAETFGVPFE  540
FNAIAQKWET IKLEDLKIEK DELLVVNCLY RGRNLLDETV IVNSPRNTVL NLIKKMNPAV  600
FVQGVVNGAY NAPFFITRFR EALFHYSSLY DMLDTIIPRE IHERVLVERT VFGQEAVNVI  660
ACEAAERIER PESYKQWQVR NVRAGFVQLP LDKEIVKMAR NRVKLSYHKD FVIDEDGGWL  720
LQGWKGRIIY SLSSWRPAHC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-47	357	736	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077208.1	0.0	scarecrow-like protein 14
Refseq	XP_020549007.1	0.0	scarecrow-like protein 14
Refseq	XP_020549008.1	0.0	scarecrow-like protein 14
TrEMBL	A0A4D8ZY01	0.0	A0A4D8ZY01_SALSN; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191