PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100033900291
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 283aa    MW: 31363.4 Da    PI: 8.7807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100033900291genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-123882147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Ote100033900291|100033900291 38 RENWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 82
                                  789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-163288IPR009057Homeodomain-like
PROSITE profilePS5129413.6873387IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-63688IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-183685IPR006447Myb domain, plants
SMARTSM007177.1E-103785IPR001005SANT/Myb domain
PfamPF002494.5E-103882IPR001005SANT/Myb domain
CDDcd001677.80E-84083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALPNIGLFS SPATGNTTSP ADDPNKKVRK PYTITKSREN WTEPEHDKFL EALQLFDRDW  60
KKIEAFIGSK TVIQIRSHAQ KYFLKAQKSG TNEHLPPPRP KRKAAHPYPQ KASKIVVLQE  120
RQSFQGTAAV PDAGFSKRPD PSTLLRNESA ASAPGWTEKP LHNSSFSHAT GGDAGCAGQT  180
MPYIYSSGSN ESTTRTRPTV LPDFAQVYSF IGSVFDPNVT GHLQKLKKMD PIDIETVLLL  240
MRNLSINLAS HDFEDHRRLL SSCEIDPEKG EAFDVTDAIL CSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076102.11e-160protein REVEILLE 6 isoform X3
SwissprotQ8H0W31e-103RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A4D9AUS61e-168A0A4D9AUS6_SALSN; Uncharacterized protein
STRINGMigut.F00285.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]