PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100033380001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 379aa    MW: 44379 Da    PI: 9.8507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100033380001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-18954147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ 
  Ote100033380001|100033380001  9 RGHWRPAEDEKLRRLVEKYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 54
                                  899*****************************.***********996 PP
2Myb_DNA-binding57.92.3e-1861104146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r ++++eE+e+l+ a++++G++ W++I+r ++ gRt++ +k++w+ 
  Ote100033380001|100033380001  61 RRPFSEEEEERLLAAHRMHGNK-WALISRLFP-GRTDNAVKNHWHV 104
                                   679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.664155IPR017930Myb domain
SMARTSM007173.5E-15857IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-298102IPR009057Homeodomain-like
PfamPF002492.3E-17954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-261062IPR009057Homeodomain-like
CDDcd001672.62E-131253No hitNo description
PROSITE profilePS5129426.84156110IPR017930Myb domain
SMARTSM007172.2E-1560108IPR001005SANT/Myb domain
PfamPF002491.6E-1561103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2063109IPR009057Homeodomain-like
CDDcd001671.79E-672103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDDPRTSPRG HWRPAEDEKL RRLVEKYGPQ NWNSIAEKLQ GRSGKSCRLR WFNQLDPRID  60
RRPFSEEEEE RLLAAHRMHG NKWALISRLF PGRTDNAVKN HWHVIMARKQ RQKSKIRSHQ  120
INNIANPKSP INYVFRRRSN SRICFQNDGE KDKVFSGCPN DLSSYSPQLY GRRNYKMPRS  180
SSNHRNDFSM FSSETRISNY SACGEVEREW ISNGDESFHF DKIRTGAEKL LEEKSIESKD  240
VPFIDFLGGS DQNVGFVLHD DIWPSNFGNG SKHKLVNVVW PAGSLEEYVQ NLVKCIRPIQ  300
IRSVKSFSYW RELIRSLPPE LRLYNPDAET YDSSQMAFKQ VFPRGFALEV VQVYSGPPII  360
AYKYRHWGYM EGSYKDYSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3091094104MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-30910958158MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-30910958158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3091094104C-Myb DNA-Binding Domain
1msf_C2e-3091094104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101908.17e-92transcription factor MYB27
RefseqXP_020554996.17e-92transcription factor MYB27
TrEMBLA0A2G9H6B48e-99A0A2G9H6B4_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.C01099.1.p9e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466