PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100033180101

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 116aa MW: 13112.4 Da PI: 4.6884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100033180101	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.7	4.9e-10	54	99	1	46
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 ++Yn YA evGF+vr+++s +++++e + + ++Cs +g+++ ++ Ote100033180101\|100033180101 54 NYYNCYAMEVGFNVRVKNSWFKRNSREKYGAVLCCSSQGFKKVKDV 99 69**************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-7	54	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEEMSLHTEG TTEGVSCASL PETDSQNGNT CEGRKEFDAP AVGMEFESYD DAYNYYNCYA 60 MEVGFNVRVK NSWFKRNSRE KYGAVLCCSS QGFKKVKDVN HLXXXXXXXX XLAVLL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022885501.1	5e-46	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_022885502.1	5e-46	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	2e-38	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G9GNK5	2e-46	A0A2G9GNK5_9LAMI; Uncharacterized protein
STRING	XP_009336308.1	4e-41	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]