PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100032770031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GATA | ||||||||
Protein Properties | Length: 194aa MW: 21693.6 Da PI: 8.9777 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.5 | 1.4e-16 | 152 | 189 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg+++ Tp++R+gp+g+k+LCnaCGl ++ kg++ Ote100032770031|100032770031 152 CTHCGVSSngTPMMRKGPSGSKSLCNACGLSWANKGVM 189 ***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 11.191 | 92 | 134 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.9E-12 | 92 | 134 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 1.33E-10 | 144 | 193 | No hit | No description |
SMART | SM00401 | 1.2E-6 | 146 | 193 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.077 | 146 | 194 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.68E-10 | 151 | 190 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-14 | 151 | 190 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 152 | 179 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-14 | 152 | 189 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSNSEMNTSN HDHPSLTATD ESVGNSAADD QSQLATCNAP CHVTLSFEDK VFTFDRVPCE 60 KALFALLILG GYEPRPSNAR ATPHIKSNDP KRQECLNRYY QKENRRCFEK KIRYSVRREV 120 ALKIHRKKGE FAPKDVGETS RIVMETSEIT TCTHCGVSSN GTPMMRKGPS GSKSLCNACG 180 LSWANKGVMR YINR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088777.1 | 3e-57 | GATA transcription factor 25-like | ||||
TrEMBL | A0A068TXX6 | 8e-46 | A0A068TXX6_COFCA; Uncharacterized protein | ||||
STRING | Migut.B00065.1.p | 5e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19793 | 3 | 3 |