PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100032740001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 57aa MW: 6137.25 Da PI: 9.5899 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 66.2 | 8e-21 | 7 | 57 | 1 | 50 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalp 50 +C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp Ote100032740001|100032740001 7 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKIFGASNVSKLLAHLP 57 7*************************89*******************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.19 | 6 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-18 | 7 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCIR GCVFAPYFCH EQGATHFAAI HKIFGASNVS KLLAHLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-20 | 3 | 57 | 7 | 60 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-20 | 3 | 57 | 7 | 60 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023891488.1 | 6e-37 | LOB domain-containing protein 29-like | ||||
Swissprot | Q5UG13 | 8e-34 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
Swissprot | Q9SLB6 | 7e-34 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A2G9H1E5 | 9e-36 | A0A2G9H1E5_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A371E1X5 | 2e-35 | A0A371E1X5_MUCPR; LOB domain-containing protein 29 (Fragment) | ||||
STRING | XP_008235795.1 | 6e-36 | (Prunus mume) | ||||
STRING | EMJ01290 | 6e-36 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Publications ? help Back to Top | |||
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