PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032630151
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 484aa    MW: 55371.3 Da    PI: 4.8867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032630151genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2346.6e-721284802374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                    + L +c e v++++ e a +lL +  e++s +g+p+qRla+y+ eAL++++a+++ +  k ++p e      ++ +++  
  Ote100032630151|100032630151 128 LQNLPRCGEKVAEKQYEHAIKLL-ECDEMSSATGTPIQRLAFYVSEALREKIAKETGKKKKPIKPLEP-----AKFVNSIP 202
                                   578999*************9987.58****************************55555555555444.....57888889 PP

                          GRAS  83 lfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeelee 160
                                   ++++ +P+ ++++l+  q+Il  +  e  +++H++D++i  G+QW+ L+q  a+ + ++  +l+iT+vg    +sk  lee
  Ote100032630151|100032630151 203 MYFKQFPVTQITNLVGSQTILHYMVMEdaRKIHVVDLEIRSGVQWVQLMQDVAASSeHPIQHLKITAVGM---KSKLILEE 280
                                   99*******************976555449***********************87735556*********...689***** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   tg++La+fA++++++f f+++++++++dl+ + ++ + +E++aV  ++ l++++ + + l++    ++ ++++l+P     
  Ote100032630151|100032630151 281 TGRQLASFADSVNLNFTFKIVMVEDISDLNQNLFERDADECIAVYAAYTLMTMVGRAGLLDN----LMGVIRDLNP----- 352
                                   *****************************************************977777766....**********..... PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                         ++s+ ++erf+e+l  + a+fdsl+  l  e+  r+ +E  l++ ++ nv+a+eg+er++rh     Wr   e +
  Ote100032630151|100032630151 353 ------CDSPHYAERFVESLFLFGAFFDSLADCLKDEETIRMDIESTLFRSSVNNVLAAEGEERVMRHLPIDDWRVLCEGF 427
                                   ......57899********************************************************************** PP

                          GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF +++ s +   qa+lll++ +  + +++  ++++l+ gWk+r+L+s+SaW+
  Ote100032630151|100032630151 428 GFVEIEPSLSSLHQANLLLQHLSyRRSFTIRRNEKCLTVGWKGRALTSLSAWK 480
                                   **********************99999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.615101459IPR005202Transcription factor GRAS
PfamPF035142.3E-69128480IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSRMFHAEKF DCTVVSDSSS ESSTQKMEYE KSPEKDEHEL GLSMSEDEIY EQQHHFEEFG  60
LFDYLYLDFL SPPFQSCGDE IIIGVNLRDI ELIEPKERKF IPSLSNRSNE VCSTLTLCKE  120
DSKQVQLLQN LPRCGEKVAE KQYEHAIKLL ECDEMSSATG TPIQRLAFYV SEALREKIAK  180
ETGKKKKPIK PLEPAKFVNS IPMYFKQFPV TQITNLVGSQ TILHYMVMED ARKIHVVDLE  240
IRSGVQWVQL MQDVAASSEH PIQHLKITAV GMKSKLILEE TGRQLASFAD SVNLNFTFKI  300
VMVEDISDLN QNLFERDADE CIAVYAAYTL MTMVGRAGLL DNLMGVIRDL NPCDSPHYAE  360
RFVESLFLFG AFFDSLADCL KDEETIRMDI ESTLFRSSVN NVLAAEGEER VMRHLPIDDW  420
RVLCEGFGFV EIEPSLSSLH QANLLLQHLS YRRSFTIRRN EKCLTVGWKG RALTSLSAWK  480
FQEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3011947911378Protein SCARECROW
5b3h_A4e-3011947910377Protein SCARECROW
5b3h_D4e-3011947910377Protein SCARECROW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071650.11e-126DELLA protein RGL2-like
TrEMBLA0A4D9BM751e-151A0A4D9BM75_SALSN; DELLA protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149