PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100032460001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 24293.4 Da PI: 4.8783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 52 | 88 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt+++ Ote100032460001|100032460001 52 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNE 88 89********************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.681 | 1 | 46 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.48E-17 | 32 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-12 | 32 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.469 | 47 | 99 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-7 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-11 | 52 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.88E-9 | 54 | 88 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 59 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MISLPVTYAC SLMLKWIGLR RCSPGPKLVG LHRCGKSCRL RWINYLRPDL KRGSFTEQEE 60 RTIIDVHRIL GNRWAQIAKH LPGRTDNETL VSNILNPHQS GAQNSMLLSR ESTPMVSSSS 120 GFVMMNENCT NWASTGDQFG LEQASEQQNC GVEVYKVDNN PVDELILQST VDEQVGNIAF 180 DGFDFEFVES AFIPPQTSYN CSLTSMEDQL AWDIVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 33 | 87 | 40 | 94 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A059PRE6 | 3e-45 | A0A059PRE6_SALMI; MYB-related transcription factor | ||||
STRING | XP_008226015.1 | 2e-39 | (Prunus mume) |