PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032450011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 476aa    MW: 53562.9 Da    PI: 5.9032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032450011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.36.8e-18167250187
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+avss+dl +aq+l+++l++l+s +g+p+qRl ay++e+L + ++ s+s++yk+l+ ++ +   s e l+++
  Ote100032450011|100032450011 167 LKQLLIACAKAVSSNDLLMAQWLMSELRQLVSVSGEPIQRLGAYMLEGLVSLMTASGSSIYKSLKLRKPA---SFELLSYT 244
                                   689***************************************************************9999...88889999 PP

                          GRAS  82 klfsev 87 
                                   ++++e+
  Ote100032450011|100032450011 245 QMLYEI 250
                                   999886 PP
2GRAS735.5e-23249330118198
                          GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                                   +i+qG QW++L+qa+a+Rp+gpp++RiTgv++p+s   +  +l+ +g+rLakfA++++vpf f++ +    +++++e+L +
  Ote100032450011|100032450011 249 EIGQGSQWIPLIQAFAARPGGPPHIRITGVDDPTSAytRGGALSIVGKRLAKFAQNFKVPFTFHA-APGPASEVRVESLGI 328
                                   79********************************9999999************************.8999*******9998 PP

                          GRAS 197 kp 198
                                   +p
  Ote100032450011|100032450011 329 RP 330
                                   75 PP
3GRAS98.31.1e-30331476238374
                          GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre..........r 308
                                   vv++veqe+++n++ F  rf+ealeyy a+f+s++++l+re +eri+vE+++l+r++vn+                     
  Ote100032450011|100032450011 331 VVTLVEQELNTNTAAFYPRFVEALEYYEAMFESMDVTLSRERKERINVEQHCLARDVVNIXXXXXXXXXXxxxxxxxxxxX 411
                                   8***********************************************************988766543300011110003 PP

                          GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                             +++aGF+  pls+ +++++k+ll+++ s+ y+ ee++g+l+lgW +r Lv++SaW+
  Ote100032450011|100032450011 412 XXXXXXXXXXFTMAGFRVSPLSSLVNATIKTLLKNYCSR-YSFEERDGALFLGWLNRDLVAASAWK 476
                                   4445667889***************************88.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.06141476IPR005202Transcription factor GRAS
PfamPF035141.9E-20249330IPR005202Transcription factor GRAS
PfamPF035143.9E-28331476IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MQASQHHRSS MSNTWYYQPV RKLEAYSLQQ CQPLNQQWTY NNISNGNGYS ILVSQDRYCT  60
LESSTLTANQ TTYNSPSTVS FSPNESSLSQ QDSQSYAADT HCGSVIHEPC VAEDFDELKH  120
KIKELETAMF GPDADVFESY DSVPSRVASE EMDSWRQLME FIPRGDLKQL LIACAKAVSS  180
NDLLMAQWLM SELRQLVSVS GEPIQRLGAY MLEGLVSLMT ASGSSIYKSL KLRKPASFEL  240
LSYTQMLYEI GQGSQWIPLI QAFAARPGGP PHIRITGVDD PTSAYTRGGA LSIVGKRLAK  300
FAQNFKVPFT FHAAPGPASE VRVESLGIRP VVTLVEQELN TNTAAFYPRF VEALEYYEAM  360
FESMDVTLSR ERKERINVEQ HCLARDVVNI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XFTMAGFRVS PLSSLVNATI KTLLKNYCSR YSFEERDGAL FLGWLNRDLV AASAWK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100624.10.0scarecrow-like protein 21
RefseqXP_011100625.10.0scarecrow-like protein 21
SwissprotQ9LDL71e-140PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A4D8ZUX10.0A0A4D8ZUX1_SALSN; Uncharacterized protein
STRINGVIT_12s0057g00560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]