PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100030740011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26283.9 Da PI: 9.6826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.2e-10 | 80 | 127 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ote100030740011|100030740011 80 AHSLAERVRREKISERMKVLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 127 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-18 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.45E-11 | 74 | 131 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 76 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.878 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-7 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 82 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVQDSRENST VSEQIFTPPN SRKRKSAAKG KAKEASANVP EKCSESSMKR SKSEXXXXXX 60 XXXXXXYIHV RARRGQATDA HSLAERVRRE KISERMKVLQ DLVPGCNKVT GKAVMLDEII 120 NYVQSLQRQV EFLSMKLATV NPRMEFNVEA ALMSKDVMFQ SRVSLPHNIY PSNGYSVVPN 180 ETPASRHQLD SFGDATSKIC SFWEDDLQSI VQMGFGQQNF QGIIPTAQMK VEL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084194.2 | 4e-94 | transcription factor bHLH78 | ||||
Swissprot | Q9LK48 | 1e-61 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | A0A0H3Y7G3 | 1e-102 | A0A0H3Y7G3_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_009788675.1 | 2e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Publications ? help Back to Top | |||
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