PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100030720001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HB-other | ||||||||
Protein Properties | Length: 227aa MW: 25761.7 Da PI: 4.7148 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1e-08 | 51 | 93 | 3 | 45 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rq++ Ote100030720001|100030720001 51 KKRRLSIEQVKALEKNFEVENKLEPERKVQLAQELGLQPRQIR 93 5668999**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-8 | 39 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.167 | 46 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0018 | 49 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 49 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.7E-6 | 51 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.74E-7 | 51 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKRLNSSDSL GGFMSICPNA TDEHNPMYSR EFEAMLEEDC CLEESGRISE KKRRLSIEQV 60 KALEKNFEVE NKLEPERKVQ LAQELGLQPR QIRELKSKLH ENGESDKLKI GDEAEAENSN 120 GGKKGEIWPK FGDLKDGSSD SDSSAILNDE INNGSPREVL NGPSSSMKIS FEVGGMKEYQ 180 PQFVKIEEHN FFGEESQRED GGVNGDGWRG RVKKEKMLQD QFYYCKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097532.1 | 1e-57 | homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A2G9I4D6 | 1e-56 | A0A2G9I4D6_9LAMI; Transcription factor HEX | ||||
STRING | Migut.L00161.1.p | 1e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |