PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100030630011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 268aa    MW: 30352.7 Da    PI: 9.6633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100030630011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-131461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  Ote100030630011|100030630011 14 RGPWTIEEDNKLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                                  89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129421.44965IPR017930Myb domain
SMARTSM007171.2E-61363IPR001005SANT/Myb domain
PfamPF002491.9E-111461IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-191588IPR009057Homeodomain-like
CDDcd001671.07E-51661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-66588IPR009057Homeodomain-like
SMARTSM007178466183IPR001005SANT/Myb domain
SuperFamilySSF497647.67E-26150259IPR008978HSP20-like chaperone
Gene3DG3DSA:2.60.40.7902.4E-27154265IPR008978HSP20-like chaperone
PROSITE profilePS0103119.471172255IPR002068Alpha crystallin/Hsp20 domain
CDDcd064645.41E-23172255No hitNo description
PfamPF000111.1E-21172261IPR002068Alpha crystallin/Hsp20 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRQPCCEKA GLKRGPWTIE EDNKLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL TEAEEDMIIE LHSRLGNRIC PKITAKATAA AGGENLDHLQ RQKQHQQTPK  120
MRAAPVAQLD SATDDGNNGK NDRRSFAYTD TWPSPSSPAS TATYGRGRTP WEIKEAETEY  180
NLRFDMPGMN REDVRVWVEE MMLIVKAKKK GNSNGEWSAK SYGKYSSRIA LPENVEFEKI  240
KAEVKDGVLY ITIHKASSHA KVFDIIVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nms_A1e-291482682214325.3 kDa heat shock protein, chloroplastic
5nms_C1e-291482682214325.3 kDa heat shock protein, chloroplastic
5nms_D1e-291482682214325.3 kDa heat shock protein, chloroplastic
5nms_G1e-291482682214325.3 kDa heat shock protein, chloroplastic
5nms_I1e-291482682214325.3 kDa heat shock protein, chloroplastic
5nms_J1e-291482682214325.3 kDa heat shock protein, chloroplastic
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071179.17e-63small heat shock protein, chloroplastic-like
TrEMBLA0A2G9I9G68e-65A0A2G9I9G6_9LAMI; Uncharacterized protein
TrEMBLA0A2U1MGW43e-64A0A2U1MGW4_ARTAN; Homeodomain-like protein
STRINGXP_002515014.12e-58(Ricinus communis)