PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100029421111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 152aa    MW: 16689.2 Da    PI: 10.2578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100029421111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.2e-0538721554
                                  HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                  r+ ++++ L++l+ +      +K + a++L +A+eYI+ L
  Ote100029421111|100029421111 38 RVSERISALQQLVSPF-----GKTDTASVLLEAMEYINFL 72
                                  78899********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2872372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-113190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-63177No hitNo description
SMARTSM003530.00253178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-73381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MMQHKRSPVS VDQNTFVNLM PKRLKIDGPL SSKEKKERVS ERISALQQLV SPFGKTDTAS  60
VLLEAMEYIN FLHEQVKVLS APYIYSTQTQ QIQGLSFVQI NTLRAKGLCL VPTSFTLGVA  120
GSNGADIWAP IKTSPSNSRR SVSSEASSIT FG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091561.16e-75transcription factor bHLH113 isoform X2
RefseqXP_011091562.16e-75transcription factor bHLH113 isoform X2
SwissprotQ7XJU22e-45BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2G9GQ114e-73A0A2G9GQ11_9LAMI; Uncharacterized protein
STRINGMigut.N03067.1.p1e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10428811
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]