PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100028950021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 37798.1 Da PI: 6.7489 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.4 | 1.1e-07 | 150 | 192 | 6 | 32 |
HHHHHHHHHHHHHHHHHHHCTSCC.C................. CS HLH 6 nerErrRRdriNsafeeLrellPk.as...............k 32 e+Er+RR+++N+++ Lr l+P+ + + Ote100028950021|100028950021 150 LEAERKRRKKLNDRLYALRALVPNiSKvlffiheltsfnnnnR 192 589********************95547777777777766662 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.312 | 144 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-7 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.09E-5 | 146 | 176 | No hit | No description |
Pfam | PF00010 | 2.9E-5 | 149 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-6 | 151 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MINQKSNIIR GRTLKVPEDE EMVDFIRVQC NMFLQQQTTT NSGTTDSFTS DPNTQKDPMN 60 HISKHKLELP NDISIDRIHL CTSPLNSNAI FMEGGAFEFT PSMETTHNNK RGGSRWVDHN 120 ECENNRSDDS DDDDPRYRRR SGKGPQSKNL EAERKRRKKL NDRLYALRAL VPNISKVLFF 180 IHELTSFNNN NRGSNVNLSK QNNHEVGDTR NEKLQQMENY FEKCQPQVEV YQVEGKELFV 240 KVFCEHKAGG FVRLMEALNV LGLEVANVNT TRHTCLESTI FKLERKNVDE TVEADEVKES 300 LLELTRNPSE NNYIHHNCQI NANHHHL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849922.1 | 1e-80 | PREDICTED: transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A0H3YBU7 | 1e-101 | A0A0H3YBU7_SALMI; Basic helix-loop-helix transcription factor | ||||
TrEMBL | A0A4D8YQR7 | 1e-101 | A0A4D8YQR7_SALSN; Uncharacterized protein | ||||
STRING | Migut.B01188.1.p | 1e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9672 | 22 | 27 |