PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100028950021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 327aa    MW: 37798.1 Da    PI: 6.7489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100028950021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07150192632
                                   HHHHHHHHHHHHHHHHHHHCTSCC.C................. CS
                           HLH   6 nerErrRRdriNsafeeLrellPk.as...............k 32 
                                    e+Er+RR+++N+++  Lr l+P+ +                +
  Ote100028950021|100028950021 150 LEAERKRRKKLNDRLYALRALVPNiSKvlffiheltsfnnnnR 192
                                   589********************95547777777777766662 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.312144217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-7145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-5146176No hitNo description
PfamPF000102.9E-5149192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-6151174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MINQKSNIIR GRTLKVPEDE EMVDFIRVQC NMFLQQQTTT NSGTTDSFTS DPNTQKDPMN  60
HISKHKLELP NDISIDRIHL CTSPLNSNAI FMEGGAFEFT PSMETTHNNK RGGSRWVDHN  120
ECENNRSDDS DDDDPRYRRR SGKGPQSKNL EAERKRRKKL NDRLYALRAL VPNISKVLFF  180
IHELTSFNNN NRGSNVNLSK QNNHEVGDTR NEKLQQMENY FEKCQPQVEV YQVEGKELFV  240
KVFCEHKAGG FVRLMEALNV LGLEVANVNT TRHTCLESTI FKLERKNVDE TVEADEVKES  300
LLELTRNPSE NNYIHHNCQI NANHHHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849922.11e-80PREDICTED: transcription factor ABORTED MICROSPORES
TrEMBLA0A0H3YBU71e-101A0A0H3YBU7_SALMI; Basic helix-loop-helix transcription factor
TrEMBLA0A4D8YQR71e-101A0A4D8YQR7_SALSN; Uncharacterized protein
STRINGMigut.B01188.1.p1e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227